Abstract
Keywords: acidurance, starvation, protein secretion, oral streptococci
Abbreviations: ATR, acid tolerance response
Previously, we have demonstrated the induction of an acid tolerance response (ATR) by exponential-phase cultures of S. mutans in response to an acid shock from pH 7·5 to 5·5 that resulted in enhanced survival at low pH, 3·53·0 (Svensäter et al., 1997 ). This exponential-phase ATR required protein synthesis, since survival was abolished in the presence of chloramphenicol. The incubation of cells with 14C-labelled amino acids during the acid shock, followed by protein extraction and PAGE analysis, demonstrated the transient up-regulation of acid-responsive proteins over a 2 h period (Hamilton & Svensäter, 1998 ). More recently, 2D electrophoresis has demonstrated the up-regulation of 64 proteins within the first 30 min of a pH change from 7·5 to 5·5, with 49 proteins down-regulated during the same period (Svensäter et al., 2000 ). Of the up-regulated proteins, 25 were specific to the acid response, while other proteins were also influenced by alternative stress conditions. These proteins are undoubtedly related to the variety of physiological changes observed with cells of S. mutans following a shift in pH from 7·5 to 5·5, while growing in continuous culture with a glucose limitation (Hamilton & Buckley, 1991 ).
Enteric bacteria possess a variety of acid survival systems with the responses differing depending on the growth medium, the stage of growth and other factors (Foster, 1995 ; Lin et al., 1995 ; Castanie-Cornet et al., 1999 ). The earlier known acid response of Salmonella typhimurium, now known as the pH-dependent exponential-phase ATR (Lee et al., 1994 ), is supplemented by at least two other strategies: a pH-independent general stress resistance dependent on the alternative sigma factor RpoS (σs), and an additional pH-dependent stationary-phase ATR. Comparisons between the acid-survival strategies in Sal. typhimurium, Escherichia coli and Shigella flexneri have indicated that all these organisms possessed the RpoS-dependent resistance system, while the latter two organisms possess several acid-resistance systems not present in Sal. typhimurium and requiring components of complex medium, such as glutamate and arginine (Lin et al., 1995 ). Recent work with E. coli has shown that cells actually possess three overlapping acid-resistance systems to protect stationary-phase cells in acid environments (Castanie-Cornet et al., 1999 ).
Although current evidence indicates that most oral streptococci generate a pH-dependent exponential-phase ATR (Svensäter et al., 1997 ; Hamilton & Svensäter, 1998 ), little information is available on the acid tolerance of oral streptococci during very slow growth or in the stationary phase, conditions frequently encountered by bacteria in dental plaque (Brecx et al., 1983 ). Unlike enteric bacteria, oral streptococci are relatively inactive metabolically in the stationary phase unless they have synthesized endogenous energy reserves, such as glycogen, in the presence of exogenous carbohydrate. In addition, upon depletion of the energy reserves, the transmembrane pH gradient will dissipate with the intracellular pH assuming the same value as the external pH, which in acidic environments will result in cessation of cellular activity (Hamilton, 1990 ). As a consequence, we were interested in whether S. mutans could generate an ATR in the stationary phase and, if so, what factors influenced such a response. For this, we compared the acid tolerance of two freshly isolated and two laboratory strains of S. mutans growing in complex medium at pH 7·5 and 5·5, using survival at pH 3·5 for 3 h as a measure of acid resistance. Unlike the laboratory strains, the freshly isolated strains were shown to possess a pH-dependent stationary-phase ATR and acid resistance was increased by carbon starvation in complex medium. Using the fresh isolate S. mutans H7 as a model system, it was demonstrated that stationary-phase acid tolerance appears to be related to enhanced protein secretion and degradation in the early-stationary phase.
Bacterial strains and media.The organisms in this study included two established laboratory strains: S. mutans LT11, provided by R. R. B. Russell, Newcastle upon Tyne, UK, and S. mutans Ingbritt, obtained from J. Sandham, University of Toronto, Canada. The two fresh isolates included S. mutans H7, isolated from an approximal caries lesion at pH 5·0, and S. mutans BM71, isolated from human dental plaque and obtained from G. Bowden, University of Manitoba, Canada. The laboratory transfer of the fresh strains used in this study was restricted to the four to five subcultures necessary for isolation and purification of the culture. Growth was carried out anaerobically (9% H2, 5% CO2 in nitrogen) with both complex and minimal media: the basal complex medium comprised (g l-1) tryptone (10) and yeast extract (5) buffered with 40 mM phosphate/citrate buffer (TYE) supplemented with 20 mM glucose (TYEG), while the defined medium (MADM) was that previously described by Bowden et al. (1976) with the Casamino acid content adjusted to 200 mg l-1. Plate counts of cells surviving an acid challenge at pH 3·5 were carried out with trypticase agar comprising (g l-1): trypticase (10), yeast extract (2), sodium carbonate (2), glucose (2), NaCl (5) and agar (10) with the pH adjusted to 7·2.
Acid tolerance during growth.
To test for pH-dependent and pH-independent stationary-phase ATRs, the acid resistance of cells was tested during normal batch growth. Cells were grown anaerobically in TYEG at pH 7·5 or 5·5 with the culture pH maintained by the addition of KOH. The pH varied by less than ±0·3 units throughout the growth period. Periodically, duplicate culture samples were removed and the cells were subjected to an acid challenge at pH 3·5 for 3 h followed by plating for survivors on trypticase agar. This latter pH is 0·20·5 units above the pH which kills 100% of exponential-phase cells grown at pH 7·5 (Svensäter et al., 1997 ). Rapid acidification was achieved by centrifuging 1·0 ml of the culture suspension in a microfuge at 15000 g for 3 min, washing the cells twice in pre-warmed sterile TYEG buffered at pH 3·5 and resuspending the cells in the same medium prior to incubation at 37 °C. All dilutions were plated in triplicate with the plates incubated at 37 °C for a minimum of 3 d. The percentage of cell survivors at each time point was calculated by comparing the numbers of cells surviving the pH 3·5 challenge and the number of cells in the original culture sample just prior to acidification. The data presented represent the mean of at least three separate determinations with the standard errors calculated by the Statview program for the Macintosh.
Glucose-depleted stationary phase.
To assess the effect of glucose depletion on acid tolerance, exponential-phase cells grown at pH 7·5 in either TYEG or MADM were rapidly washed and resuspended in the same medium at pH 7·5 and 5·5 without glucose. Following a 2 h adaptation period at 37 °C, duplicate cell samples were removed for plate counts on trypticase agar prior to rapid acidification of the culture to pH 3·5 as described above. In order to determine the rate of acid killing, duplicate samples were removed each hour over a 3 h period and the cultures were diluted and plated for survivors on trypticase agar. As above, the percentage survival was calculated from the cell counts obtained during exposure to pH 3·5 and compared to those of the same samples prior to acidification to pH 3·5. Control cells were incubated in the same medium supplemented with 20 mM glucose. The pH in all experiments varied less than±0·2 units during any incubation period and the data presented represent the mean of at least three separate determinations.
Intracellular glycogen analysis.
The glycogen content of cells was determined during the growth of the test strains in TYE containing 10 mM glucose. Culture samples (10 ml) were removed periodically to a boiling water bath for 10 min followed by centrifugation at 15000 g for 15 min. The boiled cells were washed twice in cold distilled water and resuspended at 0·4 mg dry weight ml-1 and then frozen (-70 °C) until analysed for glycogen. Glycogen was assayed by the method of DiPersio et al. (1974) .
2D gel electrophoresis.
Culture supernatant fractions were filter-sterilized (0·22 µm) and concentrated 10-fold (Ultrafree-MC, 5000 NMWL; Millipore) and the proteins/peptides were separated by 2D electrophoresis essentially as previously described by Svensäter et al. (2000) . The first dimension isoelectric focusing was run on linear 7 cm immobilized pH gradient (IPG) strips (Amersham Pharmacia Biotech) in the pH range 47 and the proteins were separated by 150 V for 1 h, 300 V for 1 h, 600 V for 1 h and 3500 V for 13 h. Following separation, the strips were immediately frozen at -80 °C until the second dimension, SDS-PAGE, could be carried out with 10% polyacrylamide gels using the Mini Protean II system (Bio-Rad). The gels were then silver-stained according to the manufacturer (Amersham Pharmacia Biotech) and scanned with a calibrated UMAX transmission scanner. Spot volumes were determined with BioImage software (version 1.6) on a Sun UltraSparc workstation (Genomic Solutions) and were defined as the sum of the pixel values comprising the protein minus the sum of the background pixel values. A reference gel was chosen and each of the other gels was matched to it selecting anchor proteins on the images and allowing the BioImage software to automatically match the images. Proteins of known molecular mass were used as standards to generate molecular mass values and pI values were deduced from the linearity of the IPG strips.
Zymography.
Proteins in filtered culture supernatants were concentrated (100-fold) by centrifugal filtration (Amicon) and separated on 10% SDS-PAGE gels containing covalently bound gelatin or 12% SDS-PAGE gels containing covalently bound casein (Bio-Rad). Electrophoresis was carried out at 100 V for 2 h at room temperature. The gels were then incubated at room temperature in 2·5% Triton X-100 for 30 min and then placed in a developing buffer (50 mM Tris-base, pH 7·5; 0·2 M NaCl; 5 mM CaCl2; 0·02% Brij-35) overnight at 37 °C. The gels were then stained with 0·5% Coomassie brilliant blue in 40% methanol/10% acetic acid for 1 h and destained with 40% methanol/10% acetic acid. Protease activity was detected as a clear zone against a stained background.
Analytical procedures.
Protein was determined by the method of Bradford (1976) , while glucose was assayed enzymically by the method of Kingsley & Getchell (1960) .
The acid tolerance of the test strains was assessed during the various phases of batch growth in complex medium (TYEG) at pH 7·5 and 5·5 by determining the numbers of cells capable of surviving an acid challenge at pH 3·5 for 3 h. As expected from previous results (Svensäter et al., 1997 ), no survivors were observed with unadapted exponential-phase cells of the laboratory strain S. mutans LT11 (Fig. 1a) and the fresh isolate S. mutans H7 (Fig. 2a). However, a small number of survivors were observed during the transition between the exponential and stationary phases when the carbon source was depleted, but this increase was short-lived and did not extend to stationary-phase cells. Conversely, growth of the organisms at pH 5·5 (Figs 1b and 2b) resulted in the expected increase in survivors due to the induction of the exponential-phase ATR with S. mutans H7 generating significantly more survivors than strain LT11. Entry into the stationary phase, however, resulted in a major difference between the strains: the number of survivors of LT11 decreased to zero immediately the cells entered the stationary phase (Fig. 1b), while the numbers of strain H7 increased in cell samples removed during the transition and early-stationary phase of growth (Fig. 2b). This result indicates the presence of a pH-dependent stationary-phase ATR in the latter organism that is absent in LT11. Similar experiments were carried out with the laboratory strain S. mutans Ingbritt and the fresh isolate S. mutans BM71, and these confirmed the differences between the laboratory and fresh strains. In summary, the results indicate that while all four strains possessed the pH-dependent exponential-phase ATR, only the fresh strains, H7 and BM71, possessed the pH-dependent stationary-phase ATR.
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Influence of the carbon source
The abrupt changes in survivors seen in Figs 1 and 2 upon depletion of the glucose suggested a possible link between carbon starvation and the ATR. To examine further the influence of glucose on survival, exponential-phase cells, grown at pH 7·5 in complex TYEG medium, were rapidly washed and incubated in the same medium at pH 7·5 and 5·5 without glucose (TYE) for 2 h to simulate entry into carbon-starved stationary phase before being subjected to the acid challenge at pH 3·5. Control cells were incubated under the same conditions in medium with glucose (TYEG). As seen with S. mutans H7 (Fig. 3a), incubation at pH 5·5 in TYEG resulted in 2- to 135-fold higher number of survivors over the 3 h acid challenge when compared to TYEG cells at pH 7·5 demonstrating induction of the ATR. Incubation at pH 5·5 without glucose, however, generated 6- to 25-fold higher numbers of survivors than the pH 5·5 cells in TYE with glucose. In addition, the incubation of pH 7·5-unadapted cells in glucose-free TYE resulted in 2- to 50-fold higher numbers of survivors than the same cells incubated with glucose. Thus glucose starvation of S. mutans H7 enhanced acid resistance in both adapted and unadapted cells, implicating glucose starvation in both pH-dependent and pH-independent stationary-phase acid tolerance. Similar results were obtained with S. mutans BM71 (data not shown). When these experiments were repeated with the laboratory strain S. mutans Ingbritt (Fig. 3b), the results indicated that the organism was more acid sensitive than strain H7 with no sustained effect of glucose starvation on acid tolerance, a result also seen with S. mutans LT11 (data not shown).
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Influence of the amino acids/proteins
When the experiment in Fig. 3(a) was repeated with S. mutans H7 grown in a defined medium (MADM) supplemented with a low level of amino acids (0·02%), acid resistance was significantly diminished with little effect of the presence or absence of glucose. That a component in, or derived from, the complex medium enhances acid resistance can be seen by comparing the numbers of survivors in TYE to those in MADM (Fig. 4). In this comparison, the numbers of H7 survivors in TYE were two to four orders of magnitude greater than those obtained with cells in MADM, with similar results (e.g. two to three orders of magnitude) obtained with S. mutans BM71. A similar comparison with the laboratory strain S. mutans LT11 indicated that this organism was only marginally influenced by the nature of the growth medium with increases ranging from only two- to ninefold, a finding similar to that seen with S. mutans Ingbritt (data not shown).
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Protein degradation
The increased acid resistance by cells of S. mutans H7 and BM71 in complex medium strongly suggested that the metabolism of the proteins and/or peptides present in the TYE medium, but not in the MADM medium, might have contributed to the increased acid tolerance of the fresh isolates by the generation of basic cellular metabolic end products. This possibility was enhanced by the observation that cells of strain H7 induced protease activity in the transition phase prior to entry into the stationary phase, activity that was not observed in strain LT11 (Fig. 5). The H7 protease activity, which was transitory, being absent in exponential- or stationary-phase cells, was linked to at least two proteolytic zones with estimated molecular masses of 55 kDa and 2532 kDa. Proteolytic activity was observed with gelatin, but not with casein, as the substrate.
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This observation led to an examination of the proteins and peptides present in the medium during growth of S. mutans H7 and strain LT11 in TYE medium with 20 mM glucose. For this experiment, the cells were removed by centrifugation and the cell-free culture supernatant was sterilized by filtration, concentrated 10-fold by centrifugal filtration, and then subjected to 2D electrophoresis. The 2D gel analysis revealed that strain H7 generated 56 extracellular proteins in mid-exponential phase compared to 19 proteins by strain LT11 with proteins ranging in size from 5 to 200 kDa. Comparative analysis of the proteins in a selected gel area (pI range 4·56) showed that mid-exponential-phase cells of strain H7 (Fig. 6b) generated at least nine proteins that were either completely (spots 1, 2, 3, 6, 7 and 8) or partially (spots 4, 5 and 9) degraded by the time the cells had reached the stationary phase (Fig. 6d). S. mutans LT11, on the other hand, generated only one protein (spot 1) that was degraded on entry to the stationary phase (Fig. 6c* vs d*).
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Energy status of early-stationary-phase cells
Enzymic analysis of the cell-free supernatant samples in the experiment depicted in Fig. 6 indicated that the glucose was completely depleted upon entry into the transition period. This raised the question as to the source of energy available to cells for the maintenance of pH homeostasis, as well as for the reactions associated with protein degradation and amino acid/peptide transport in the transition and early-stationary phases of growth. With glucose as the exogenous energy source, oral streptococci have a variable capacity to synthesize intracellular glycogen and this was demonstrated in experiments comparing the glycogen synthetic activity of S. mutans H7 and strain LT11 during growth in TYE with 10 mM glucose. As seen in Table 1, strain H7 possessed two- to fourfold more glycogen than LT11 upon entry into the transition and stationary phases.
Table 1. Glycogen present in cells of Streptococcus mutans strains H7 and LT11 during growth on tryptone-yeast extract medium at pH 7·5 with 10 mM glucose as the carbon source
The results of the current research indicate that fresh isolates possess additional properties for protection against acid stress not observed with the strains transferred in laboratory medium for prolonged periods of time. None of the S. mutans strains in this study exhibited a sustained ATR during batch growth at pH 7·5 in either the exponential or stationary phases, although a small increase in survivors was seen in the transition between these two phases that was not sustained in the stationary phase (Figs 1 and 2). Growth at pH 5·5 for 2 h did, however, induce an ATR in exponential-phase cells of all strains, confirming earlier results (Svensäter et al., 1997 ), but only the fresh isolates, strains H7 and BM71, were able to sustain a pH-dependent stationary-phase ATR. While not often acknowledged, fresh isolates of oral bacteria possess different properties to those transferred for long periods of time in complex laboratory medium. For example, S. mutans and other oral streptococci have been shown to undergo significant alterations in enzyme composition and activity in as little as 225 daily transfers in the laboratory (Cvitkovitch & Hamilton, 1994 ), not an unreasonable observation when one compares the nutrients available in dental plaque with that of laboratory medium comprised of preformed essential nutrients.One feature not readily assessed in the growth experiments was the nature of the short transitory increase in survivors as the cells entered the stationary phase (Figs 1 and 2) at a point that coincided with the depletion of glucose. That the effect was due to the depletion of glucose was seen in the artificial stationary-phase experiment which showed with strain H7 (Fig. 3a) that, while adapted cells were inherently more acid resistant than unadapted cells, the acid tolerance of unadapted and adapted cells was enhanced by the absence of glucose during the acid challenge at pH 3·5 over the 3 h period. No such differential effect was seen with the laboratory strain S. mutans Ingbritt (Fig. 3b) and strain LT11. Earlier results with S. mutans H7 (Svensäter et al., 2000 ) have demonstrated cross-protection of cells to acid killing by prior exposure of cells to starvation conditions. Starvation, induced by exposure of cells to fivefold diluted basal medium, was most protective when the glucose concentration was diluted from 20 to 4 mM, although an enhanced effect over cells adapted in full-strength medium was seen when the diluted medium was devoid of glucose.
Carbohydrate-starved cells of Lactobacillus lactis IL1403 exhibit enhanced resistance to acid, heat, ethanol, osmotic and oxidative stress with this cross-protection occurring progressively with the onset of stationary phase (Hartke et al., 1994 ). Unlike the development of the ATR in exponential-phase cells of L. lactis (Rallu et al., 1996 ), the stationary-phase response was independent of protein synthesis since it was not abolished, but enhanced, by chloramphenicol or rifamycin. The use of transposon mutagenesis with L. lactis MG1363 has suggested a link between acid tolerance and the stringent response since a number of acid-resistant mutants had defects in the biosynthetic pathway for the stringent response factor (p)ppGpp (Rallu et al., 1996 ). Since (p)ppGpp is a key pleiotropic regulator of gene expression and survival in stationary phase (Nyström, 1993 ), it is conceivable that the stringent response may also be a factor in the regulation of stress in S. mutans and other oral streptococci.
The enhanced acid resistance of S. mutans H7 and BM71 in complex medium (TYE) compared to the low amino acid defined medium (MADM) clearly differentiates these strains from S. mutans LT11 (Fig. 4). One assumes that differences in the metabolism of proteins, peptides and amino acids by the former organisms are central to this enhanced resistance. The appearance of proteolytic activity with cells of strain H7 during the transition from exponential to stationary phase (Fig. 5), and the evidence of protein/peptide generation in the culture medium during the exponential phase with subsequent utilization during early-stationary phase (Fig. 6), support this contention. The appearance of a 55 kDa protease in S. mutans H7, using gelatin as a substrate, confirms an earlier report of such activity by Harrington & Russell (1994) . As to the extracellular proteins/peptides, preliminary experiments indicate that a majority of the proteins in the culture medium seen in Fig. 6 are secreted by S. mutans H7 into the medium mainly during the mid-exponential phase (O. Björnsson & G. Svensäter, unpublished results). On-going mass spectrometric analysis, using peptide mass fingerprints for protein identification, indicates that the 60 kDa chaperonin DnaK and the glycolytic enzyme enolase are secreted in a manner similar to that recently reported for Streptococcus pyogenes (Chaussee et al., 2001 ). Extracellular proteins are known to be important virulence factors and while information is emerging as to the regulation of their expression, less is known about their fate and whether such proteins can be utilized to enhance acid tolerance.
Work with E. coli and Shigella flexneri has identified acid-resistance systems protecting cells to pH 2·5 and requiring glutamate or arginine during the low pH challenge with the arginine-acid survival system in E. coli involving arginine decarboxylase (Lin et al., 1995 ). More recently, a glutamate decarboxylase alkalinization cycle was identified in E. coli to protect cells from cytoplasmic acidification (Hersh et al., 1996 ), refining the early observations of Gale & Epps (1942) . While there is relatively little specific information on the role of amino acids and peptides in acid resistance of S. mutans, oral bacteria are known to utilize salivary proteins for growth (Cowman et al., 1979 ; De Jong et al., 1984 ) and the uptake of arginine-containing peptides by mixed oral bacteria utilizing glucose has been shown to stimulate pH increases over that observed with glucose alone (Kleinberg et al., 1976 ). As the cells enter the stationary phase and the exogenous glucose becomes depleted, an energy source is important for transport processes, consequently the utilization of endogenous carbon reserves, such as glycogen, becomes crucial to cell physiology. This energy source, the principal endogenous energy source for S. mutans (Hamilton, 1976 ), is also essential for the maintenance of pH homeostasis by the extrusion of proton via the H+/ATPase (Hamilton & Buckley, 1991 ). Thus the increased accumulation of glycogen by S. mutans H7 compared to strain LT11 (Table 1) would give the former organism a selective energy advantage as the cells entered the stationary phase of growth.
Clearly the current results, coupled with those on the multiple stress response of S. mutans H7 (Svensäter et al., 2000 ), indicate a strong regulatory link between the acid stress and carbon/nitrogen starvation responses in the organism. In comparing the multiple stress response in S. mutans H7, it could be shown that the fivefold dilution of a defined medium resulted in the up-regulation of 58 proteins, 11 of which were specific to starvation; 20 additional proteins exhibited diminished synthesis. Acid shock from pH 7·5 to 5·5, on the other hand, resulted in the up-regulation of 64 proteins and the down-regulation of 49 proteins with 25 specific to the acid response. Of particular interest was the fact that 25 of those proteins that showed enhanced synthesis were common between the acid and starvation responses, and a number of these were associated with enzymes of the glycolytic pathway (unpublished results). Starvation-induced stress resistance is a common feature of both Gram-positive and Gram-negative bacteria with significantly more known about the response in enteric bacteria (Matin, 1991 ). The pH-independent general stress resistance in Gram-negative bacteria, such as Sal. typhimurium and E. coli, requires the growth-phase-dependent transcriptional factor σs, the product of the rpoS gene (Hersh et al., 1996 ; Lin et al., 1995 ). While σs has not been found in Gram-positive bacteria, Bacillus subtilis is known to possess a regulon controlled by the alternative sigma factor σB, regulating 60 general stress proteins activated by various stresses and on entry into the stationary phase (Hecker et al., 1996 ; Bernhardt et al., 1997 ).
We would like to thank Ulla-Britt Larsson (Malmö) and Elke Greif (Winnipeg) for their excellent technical assistance. This study was supported by grants to G.S. from the Medical Research Council of Sweden (K97-24X-12266-01) and the KK Foundation of Sweden, and to I.R.H. from the Medical Research Council of Canada (MT-3546).References
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Received 2 April 2001; revised 5 June 2001; accepted 15 June 2001.