Abstract
Abbreviations: A/E, attaching and effacing; DIC, differential interference contrast; EHEC, enterohaemorrhagic Escherichia coli; EPEC, enteropathogenic E. coli; LEE, locus of enterocyte effacement; TMAO, trimethylamine N-oxide; TTS, type III secretion; TTSS, type III secretion system
The TTSS is associated with many Gram-negative pathogens that cause disease in humans, animals, insects and plants (Galan & Collmer, 1999). Features of the TTSS include: (i) the formation of a macromolecular complex that spans both membranes, and extends a needle-like projection out of the cell; and (ii) the delivery of virulence factors directly into the host cell (O'Connell et al., 2004). Once injected into the host cell, the virulence factors, referred to as effectors, co-opt the signalling pathways of the cell to promote responses beneficial to the pathogen (Galan & Collmer, 1999). The TTSS of EPEC and EHEC is unique in that it attaches a filamentous extension to the needle complex (Sekiya et al., 2001; Wilson et al., 2001). The filament is composed of EspA, and appears to function as the conduit for the translocation of effector proteins. The effectors are delivered into the host cell through a translocation pore formed in the plasma membrane of the host cell by the translocator proteins EspB and EspD (Hartland et al., 2000; Ide et al., 2001).
Expression and secretion of the virulence factors are tightly regulated, and respond to environmental stimuli, such as temperature, pH and nutrient availability (Beltrametti et al., 1999; Kenny et al., 1997). Such regulation permits the coordinated and timely expression of the proteins required for virulence expression under changing environmental conditions. Clarification of the environmental factors and signal transduction systems that control virulence expression is important to improve our understanding of pathogenesis, and to identify drug targets. Most of the studies on the expression of virulence genes in EHEC have been carried out with bacteria grown under aerobic conditions, although the intestinal tract, which is the target site of EHEC infection, is anaerobic. Like other E. coli strains, EHEC is a facultative anaerobe, and it possesses a large number of systems for regulating anaerobic respiration in response to whatever terminal electron acceptor is available. These regulatory systems channel electrons from the donor to terminal acceptors, such that the overall difference in potential is maximized for any given growth condition (Shalel-Levanon et al., 2005). The terminal electron acceptors used in anaerobic respiration are usually low-molecular-weight oxygen-containing molecules, such as trimethylamine N-oxide (TMAO), DMSO, nitrate and fumarate, which are abundant in the environment.
In this study, we performed what we believe to be the first investigation of the expression and type III secretion (TTS) of virulence factors occurring in response to electron acceptors under anaerobic conditions. Our results suggest that specific electron acceptors, TMAO and nitrate, enhance TTS by accelerating the formation of the fully assembled functional TTS apparatus.
Bacterial strains, plasmids and growth conditions.The bacterial strains and plasmids used in this study are listed in Table 1. Unless otherwise specified, the bacteria were pre-cultured in 2 ml LuriaBertani (LB) medium for 14 h at 30 °C, with shaking, and then 100 µl of the culture was used to inoculate 10 ml fresh LB medium, both with and without an electron acceptor (10 mM), in a 15 ml tube. The bacteria were further cultured for 3 h at 37 °C in an anaerobic jar, and for 3 h at 37 °C without shaking (standing conditions). To inhibit protein synthesis and respiration, excess amounts of chloramphenicol (100 µg ml1) or amytal (5 mM) were added to the bacterial culture grown without an electron acceptor. After 30 min incubation at 37 °C, an electron acceptor was added, and the bacteria were incubated for an additional 1 h at 37 °C. The electron acceptors used were TMAO (Sigma), DMSO (Wako), nitrate (Sigma), and fumarate (Wako).
Table 1. Bacterial strains and plasmids used in this study
Construction of deletion mutants.
To construct deletion mutants, we employed a one-step inactivation method (Datsenko & Wanner, 2000). Briefly, PCR products containing the chloramphenicol-resistance cassette flanked by 40 bp of sequence corresponding to the 5' and 3' ends of each gene were introduced by electroporation into the EHEC Sakai strain harbouring pKD46, which is a helper plasmid encoding the λ-Red, Gam and Bet proteins (Datsenko & Wanner, 2000). The chloramphenicol-resistant colonies were examined for the correct chromosomal structures by PCR tests using locus-specific primers. The DNA sequences of the primers are indicated in Table 2.
Table 2. Oligonucleotide primers used in this study
Adherence assay.
Bacterial cultures grown as described above were added directly to tissue culture wells that contained a confluent monolayer of Caco-2 cells growing on glass coverslips (13 mm diameter). After 2 h incubation at 37 °C, the cells were washed five times with PBS to remove non-adherent bacteria. The cells were then incubated in fresh medium for an additional 1.5 h at 37 °C. After washing with PBS, the cells were fixed with 100 % methanol for 10 min at room temperature, and stained with Giemsa staining solution. The adherence efficiency was determined by counting the number of bacteria adhering to the Caco-2 cells.
Electrophoresis and immunoblot analysis.
SDS-PAGE (813.5 %) or Tricine-SDS-PAGE (16 %) was used throughout this study (Laemmli, 1970; Schagger & von Jagow, 1987). For immunoblot analysis, proteins separated by SDS-PAGE or Tricine-SDS-PAGE were transferred to an Immobilon-P transfer membrane (Millipore) or an Immuno-Blot PVDF membrane (Bio-Rad). The proteins on the membranes were detected using primary antibodies specific for EspA, EspB, Tir (Tatsuno et al., 2000), EscF (rabbit antibody raised against the MBPEscF fusion protein), EscC (Sekiya et al., 2001), DnaK (mAb; Calbiochem) and FLAG (mAb; Sigma). Proteins were visualized with a horseradish-peroxidase-conjugated secondary antibody using an ECL detection kit (Amersham Biosciences).
Analysis of proteins in culture supernatant and whole-cell extract.
Bacteria grown as described above were harvested from 1 ml culture by centrifugation. The bacterial pellet was dissolved in SDS-sample buffer (100 µl per OD600 unit of original culture). To prepare the proteins from the culture supernatant, 10 ml culture was spun, and the supernatant was passed through a filter (0.22 µm pore size; Millipore). Proteins in the filtered supernatant were precipitated by 6 % (final) trichloroacetic acid, and dissolved in SDS sample buffer. The proteins were separated by SDS-PAGE or Tricine-SDS-PAGE, and detected by immunoblotting or Coomassie brilliant blue staining.
Immunofluorescence.
A drop of bacterial culture prepared as described above was placed on a glass coverslip (13 mm diameter), and the bacteria were fixed by air drying in 4 % paraformaldehyde for 50 min at 37 °C. The coverslips were washed twice with PBS, and blocked in PBS containing 4 % BSA for 30 min at room temperature. The washed bacteria were then incubated with a rabbit polyclonal anti-EspA antibody for 1 h at 37 °C. After two washes, the coverslips were incubated with Alexa-488-labelled goat anti-rabbit secondary antibody for 1 h at 37 °C to stain EspA filaments. The coverslips were washed twice, and mounted onto glass slides using 2 µl Vectashield (Vector Laboratories). The fluorescence was observed under a confocal laser scanning microscope, and the bacteria were examined with Nomarski differential interference contrast (DIC; Leica).
Measurement of the relative ATP concentration.
The relative ATP concentration of the bacterial whole-cell lysate was measured using an ATP determination kit (Molecular Probes), as described in the manufacturer's instructions, with slight modification. A 10 µl volume of bacterial culture, prepared as described above, was mixed with 90 µl standard reaction solution containing polymyxin B sulfate (1x104 units ml1) in a luminometer cuvette. The reaction mixture was vortexed briefly, and the luminescence was measured immediately in a Lumat LB9501 luminometer (Berthold). The luminescence readings were carried out for 10 s. The luminescence measurements were normalized to the bacterial density of each culture, which was measured as the OD600 value.
Isolation of the TTS apparatus.
The TTS apparatus was isolated by adapting a method described by Kubori et al. (1998). Overnight cultures (8 ml) of bacteria harbouring multiple copies of grlA grown in LB at 30 °C, with shaking, were diluted in 800 ml LB, both with and without an electron acceptor (TMAO and nitrate), and the bacteria were then grown without shaking for 4 h at 37 °C. The bacteria were collected by centrifugation, and gently suspended in 80 ml ice-cold sucrose solution (500 mM sucrose, 150 mM Tris, pH 8.0). The suspension was mixed with 4 ml 10 mg lysozyme ml1, and then with 320 µl 500 mM Na2EDTA, and stirred on ice for 1 h. After incubation at 37 °C for 15 min with stirring, the suspension was mixed with 8 ml 3 % Triton X-100, and incubated at room temperature until the solution became clear. After adding 400 µl 1 M MgSO4 and 5.28 ml 5 M NaCl, the sample was spun at 20 000 g for 20 min at 4 °C to remove unlysed cells and cell debris, and then the supernatant was spun at 100 000 g for 1 h at 4 °C. The pellet was suspended in TET buffer (10 mM Tris, pH 8.0, 2 mM EDTA and 0.1 % Triton X-100), and subjected to density-gradient centrifugation with 12 ml 36 % CsCl for 17 h at 20 °C. Macromolecules in 10 ml of the middle portion of the gradient were spun down at 100 000 g for 1 h at 4 °C. After washing with TET buffer, the pellet was dissolved in sample buffer or TET buffer for immunoblotting.
We compared the growth and expression of virulence factors in EHEC grown under two low O2 conditions, anaerobic and standing, with those in EHEC grown under aerobic conditions. Under both of the low O2 conditions, the growth rate of EHEC in the exponential phase was slower, and its cell density in the stationary phase was lower, than when it was grown under aerobic conditions. The expression level of the LEE-encoded virulence factors EspB and Tir was comparable between EHEC grown under low O2 and aerobic conditions. However, the amounts of EspB and Tir in the culture supernatant of EHEC grown under the low O2 conditions were much lower than in the supernatant of the aerobic culture (Fig. 1a). Since the growth of EHEC under the low O2 conditions was slower than under aerobic conditions, we added terminal electron acceptors to the medium, as an alternative to O2, and stimulated EHEC growth. All four electron acceptors tested, i.e. TMAO, DMSO, nitrate and fumarate, affected the growth in a similar manner: the growth rate in the exponential phase was not changed, whereas the growth after the transition from the exponential to the stationary phase was stimulated (Fig. 1b). We next examined the expression and secretion of virulence factors in EHEC grown in early stationary phase in the presence of an electron acceptor. Irrespective of the growth medium, the amount of EspB or Tir protein expressed in bacteria grown with an electron acceptor was almost the same as for bacteria grown without an electron acceptor. However, the amount of EspB and Tir in the culture supernatant of bacteria grown with an electron acceptor was greater than in the supernatant of bacteria grown without an electron acceptor (Fig. 1c). Although the effect on growth was not very different among the electron acceptors we tested, the effect of TMAO and nitrate on TTS was much stronger than that of the other electron acceptors. These results suggest that the increase in secretion is not the result of growth stimulation, but a result of the action of other mechanisms that specifically respond to TMAO and nitrate. The increase in EspB and Tir in the culture supernatant was not the result of cell lysis or TTSS-independent secretion, because the cytoplasmic protein DnaK was not detected in the supernatant, and neither EspB nor Tir was present in the culture supernatant of the escD mutant of EHEC, which lacked a functional TTSS (Fig. 1d).
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The increase of TTS in response to either TMAO or nitrate is a general phenotype among EHEC O157 strains, since the increase in TTS was observed in all of the eight strains tested (data not shown), which are representative of EHEC O157 subgroups (Ogura et al., 2006; Ohnishi et al., 2002).
Activation of anaerobic respiratory systems is necessary for TMAO- and nitrate-enhanced TTS
To explore the role of anaerobic respiratory systems in the enhancement of TTS, we examined the effect of a respiratory inhibitor on this process. Bacteria were grown in LB without an electron acceptor for 3 h, and then a respiration inhibitor, amytal, was added 30 min prior to the addition of the electron acceptor. Even though the EHEC was grown to the transition phase without an electron acceptor, further incubation with either TMAO or nitrate stimulated the secretion of EspB. In contrast, prior treatment with amytal completely abolished the stimulation of EspB secretion by TMAO and nitrate (Fig. 2a). Moreover, we examined the effect of TMAO and nitrate on the TTS in a series of mutants that were deficient in quinone synthesis. Quinones are lipid-soluble molecules that are essential components in respiratory electron transfer chains. To explore the role of quinones in the enhancement of TTS, the TTS response of mutants defective in quinone synthesis was compared with that of the wild-type (WT) strain. In E. coli, the ubiE mutant is deficient in the synthesis of ubiquinone and menaquinone, whereas the menA mutation abolishes the synthesis of menaquinone and demethylmenaquinone (Lee et al., 1997; Stevenson et al., 1998; Wissenbach et al., 1992). In EHEC, both the ubiE mutant and the menA mutant impaired the enhancement of EspB secretion in response to TMAO and nitrate (Fig. 2b). These results strongly suggest that activation of the respiratory system is necessary for activation of TTS in EHEC grown under anaerobic conditions.
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A respiration system specific for TMAO or nitrate is necessary for enhanced TTS
At the final stage of respiration, electrons are transferred from quinones to the terminal electron acceptor by using an electron-acceptor-specific reductase. TMAO reductase, TorA, is encoded by the torCAD operon, and its expression is activated by the TorSTR signalling system (Ansaldi et al., 1999; Mejean et al., 1994; Pommier et al., 1998). E. coli also possesses three distinct nitrate reductases. The narGHJI operon encodes the major respiratory nitrate reductase located in the cytoplasmic membrane, and its expression is activated by the NarXL signalling system (Darwin et al., 1996; Walker & DeMoss, 1994). The narVWYZ operon encodes a second nitrate reductase, which is biochemically similar to the NarGHJI enzyme, but is constitutively produced at relatively low levels in the cell (Blasco et al., 1990). A third nitrate reductase, encoded by the napFDAGHBC operon, is located in the periplasm, and its production is activated by the NarPQ signalling system, but not by NarXL (Darwin & Stewart, 1995; Darwin et al., 1998; Stewart, 2003). To explore the role of electron acceptors in activation of TTS, we first examined a series of mutants that were deficient in either the TMAO- or the nitrate-specific signalling system, as this is necessary for activation of the corresponding expression of the gene encoding the reductase. The TTS response to TMAO or nitrate was abolished by the defect in the signaling system, i.e. the torSTR and narXL deletion mutations, respectively, without affecting the level of EspB expression in the cell (Fig. 3a). On the other hand, the response of TTS to nitrate was unaffected by deletion of the NarPNarQ system. Deletion of the nitrate-specific signalling systems NarXNarL and NarPNarQ did not affect the response to TMAO, and vice versa (Fig. 3a). Next, we examined the response in a series of mutants that were deficient in either TMAO- or nitrate-specific reductase. The TTS response to TMAO was abolished completely by the torCAD mutation, but was not affected by the narGHJI mutation. In contrast, the nitrate-enhanced secretion was greatly decreased by the narGHJI mutation, but was not affected by the torCAD mutation (Fig. 3b). The NarVWYZ enzyme, which is constitutively produced at low levels, had no effect on the nitrate-enhanced TTS (Fig. 3b). These results clearly indicate that the activation of a respiratory system specific for either TMAO or nitrate is essential for the enhancement of TTS.
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Increase in ATP concentration by electron acceptors is not correlated with the level of TTS
The TTSS needs ATP as a driving force to secrete virulence factors (Eichelberg et al., 1994; Hueck, 1998; Woestyn et al., 1994). Since the activation of respiration could increase the yield of ATP, one explanation for the enhancement of TTS by activating the respiratory system is that the increased ATP concentration stimulates TTS. To examine the correlation between ATP and the level of TTS, we measured the ATP concentration in bacteria grown both with and without an electron acceptor. Although the ATP concentration was correlated with the growth rate in the late exponential to early stationary phase, no correlation with the amount of secreted protein was observed (Figs 4 and 1b). All four electron acceptors used in this study enhanced ATP production, while DMSO and fumarate enhanced TTS at a much lower level than TMAO and nitrate. We also increased the ATP concentration in EHEC by using the purK mutant, and growing the bacteria in medium containing adenine. Although the concentration of ATP in the mutant grown with adenine was higher than in the WT grown with an electron acceptor (Fig. 4a), the secretion of EspB by the mutant remained very low, and was similar to that of the WT EHEC grown without an electron acceptor (Fig. 4b).
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Electron acceptors activate an existing TTS apparatus
To determine whether the enhanced TTS required de novo protein synthesis, we examined the response after inhibiting protein synthesis. Bacteria were grown in LB without an electron acceptor for 3 h, and then a translation inhibitor, chloramphenicol, was added for 30 min prior to the addition of the electron acceptor. Albeit reduced in the level of secretion, bacteria treated with chloramphenicol showed the TTS response to TMAO and nitrate (Fig. 5). Moreover, the inhibition of respiratory activity by amytal completely abolished the response to electron acceptors (Fig. 5). These results support the idea that either TMAO or nitrate respiration is essential for the enhanced TTS described above, and they clearly indicate that the enhanced TTS could be achieved without de novo protein synthesis, including synthesis of the TTS apparatus. Thus, either TMAO or nitrate respiration activates an existing TTS apparatus.
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TMAO and nitrate facilitate maturation of the TTS apparatus
The functional TTS apparatus of EHEC consists of a basal body with a needle structure attached to it by an EspA-sheath-like structure. The EspA-sheath-like structure protrudes from the bacterial surface, and forms a filament that serves as a bridge, tethering the bacterium to the host cell (Knutton et al., 1998). To assess the effect of the electron acceptor on the formation of functional TTS apparatus, we observed the production of the EspA filament, and the adherence capacity of EHEC grown both with and without an electron acceptor. EspA filaments on the surface of EHEC were detected using immunofluorescence and an EspA-specific antibody (Fig. 6a). Compared with EHEC grown without an electron acceptor, EspA filaments on bacteria grown with TMAO and nitrate increased 5.4- and 3.5-fold, respectively. Because the adherence of EHEC to epithelial cells, and subsequent formation of microcolonies, depend mainly on TTSS activity, we next examined the adherence capacity of bacteria grown in LB with an electron acceptor (Fig. 6b). The adherence capacity of bacteria grown in LB with TMAO and nitrate increased 20.7- and 27.0-fold, respectively, over that of bacteria grown without an electron acceptor. The adherence capacity of the escD mutant was not increased by an electron acceptor, indicating that the increased adherence caused by TMAO and nitrate was dependent on the TTSS.
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Since TTS was enhanced by the activation of a respiratory system without de novo protein synthesis, it seemed likely that the TTS apparatus changed from an inactive form to an active form in response to the activation of either TMAO or nitrate respiration. Recently, it was reported that there are two forms of TTS apparatus: the needle complex and the base complex in Salmonella typhimurium (Marlovits et al., 2004). In contrast to the fully assembled needle complex, the base complex, which is thought to be the preassembled complex, lacks the needle substructure. As suggested by the differences in the appearance of EspA filament on the bacterial surface (Fig. 6a), the TTS apparatus that formed in EHEC grown without an electron acceptor could be the base complex lacking the needle substructure. To investigate the presence of the needle component in the TTS apparatus, we partially purified the TTS apparatus by preparing fractions containing macromolecules from the bacterial membrane. We first tried to isolate the TTS apparatus in WT EHEC, but failed to detect any of the component proteins by using antibodies. We then increased the expression of the TTS apparatus by introducing multiple copies of the grlA gene, which encodes a positive transcriptional regulator for LEE genes (Deng et al., 2004). Although overexpression of the grlA gene increased the amount of translocators and effectors, growth with either TMAO or nitrate further stimulated the secretion markedly (Fig. 7a). The amount of EscC, the outer-ring protein of the basal body of the TTS apparatus (Gauthier et al., 2003), was also increased to a detectable level, and the amount of EscC was not altered by the presence of an electron acceptor (data not shown). The fraction containing the needle complex was prepared from EHEC overexpressing grlA, grown both with and without an electron acceptor, and it was analysed for the components of TTS apparatus, i.e. EscC and EscF. EscF is a needle structural protein (Sekiya et al., 2001). EscC was detected at the same level in bacteria irrespective of the growth conditions, while the amount of EscF protein was much greater in preparations from bacteria grown with either TMAO or nitrate, than from those grown without an electron acceptor (Fig. 7b). These results strongly suggest that, under anaerobic growth conditions, formation of the fully assembled needle complex is stimulated by the activation of specific respiratory systems, such as the TMAO and nitrate respiratory systems.
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Although EHEC utilizes all four of the terminal electron acceptors we examined, the effect on the stimulation of TTS was different for each acceptor. Even though DMSO and fumarate could stimulate EHEC growth as much as TMAO and nitrate, the amount of secreted proteins elicited by either DMSO or fumarate was much lower than that elicited by either TMAO or nitrate. These results indicate that stimulation of growth by activating anaerobic respiration is not the reason for TTS activation. Indeed, the increase in ATP levels was not correlated with TTS activity, and the electron acceptor could activate TTS after blocking protein synthesis. It is likely that activation of respiratory systems affects the function of TTSS-associated proteins independently of growth stimulation. We found that EHEC grown without an electron acceptor produced TTS apparatus lacking the EspA filament and EscF needle components at a higher frequency than EHEC grown with either TMAO or nitrate. Since EscC was isolated with TTS apparatus that was partially purified from the membrane of EHEC grown without an electron acceptor, it is unlikely that the translocation of TTSS basal body components to the bacterial membrane was impaired when EHEC was grown without an electron acceptor. In S. typhimurium, two forms of TTS apparatus have been found: one is a mature complex with a needle structure, and the other is thought to be a premature form of the complex, lacking the needle structure (Marlovits et al., 2004). Furthermore, assembly of the basal body, which contains outer rings and inner rings, is dependent on Sec machinery, while the next step to form the needle extension is dependent on the components of TTS apparatus (He et al., 2004). Therefore, it is plausible that stimulation of the respiratory system by an electron acceptor enhances the maturation step of TTS apparatus formation, which is dependent on the components of TTS apparatus.
The analysis with mutations in genes encoding quinone synthesis indicates that quinones are necessary for the enhancement of TTS by TMAO and nitrate. Quinones have been shown to modulate the activity of membrane proteins. The oxidized forms of quinones inhibit the kinase activity of ArcB during aerobic growth through the oxidation of two cytosolic redox-active cysteine residues (Georgellis et al., 2001; Malpica et al., 2004). We think that it is likely that quinones play an important role in the formation of the mature TTS apparatus in EHEC by affecting the activity of a component. We propose that oxidized quinones promote conformational changes in a component of TTS apparatus that induces the recruitment of the needle structure to form the mature TTS apparatus. DsbA and DsbB, whose oxidization is dependent on quinones, are known to be required for TTSS activity in Shigella flexneri, Salmonella typhimurium and Yersinia pestis (Watarai et al., 1995; Miki et al., 2004; Jackson & Plano, 1999). In Y. pestis and S. typhimurium, DsbA is necessary for disulfide bond formation in YscC and SscC, respectively, which are outer-ring components of the TTS basal body. Since translocation of EscC, a homologue of YscC and SscC, into the macromolecule was observed in EHEC grown without an electron acceptor, it is unlikely that TTS apparatus formation is activated through the activity of DsbA and DsbB. Furthermore, amounts of the oxidized forms of DsbA and DsbB in EHEC were not changed by growth with either TMAO or nitrate, as compared with those with either DMSO or fumarate (H. Ando & T. Tobe, unpublished results), suggesting that the maturation of TTS apparatus is achieved through a mechanism independent of DsbA and DsbB activity. Since a respiratory system is essential for bacterial growth, it is difficult to distinguish the effect of a deficiency in a respiratory system on TTS function from its effect on protein synthesis or the expression of a functional TTS apparatus in vivo. The identification of a regulatory component that promotes maturation of TTS apparatus would be helpful for the further elucidation of these mechanisms.
We thank Akio Abe (Kitasato University) for the antiserum against EscC, Tomoko Kubori and Hiroki Nagai (Osaka University) for technical advice, and Tetsuya Hayashi (University of Miyazaki) for helpful discussion. This work was supported by Grants-in-Aid for Scientific Research on Priority Areas (C) from The Ministry of Education, Culture, Sports, Science, and Technology, Japan.Edited by: B. Kenny
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Received 4 August 2006; revised 3 October 2006; accepted 9 October 2006.