Abstract
Abbreviations: AFM, atomic force microscopy; D value, decimal reduction time value
Microbial biofilms on surfaces cost the USA billions of dollars per year in equipment damage, product contamination, energy losses and medical infections. Biofilm formation is a serious medical problem that leads to colonization of medical devices such as prosthetic implants (Costerton et al., 1995; Elder et al., 1995; Ell, 1996). Biofilms are responsible for diseases such as otitis media and play a role in cystic fibrosis and Legionnaire's disease, among others (Costerton et al., 1999). Biofilms are also responsible for plaque formation on teeth and tooth decay. Many household surfaces, including toilets, sinks, countertops and cutting boards, are contaminated by biofilms. Biofilms impact adversely upon many industrial processes, leading to a decrease in process efficiency and end-product purity. Thus, biofilm control has become an area of intense study (De Kievit et al., 2001).
Conventional methods of killing free-living bacteria through antimicrobial agents and disinfection are often ineffective against bacteria within a biofilm (Hoyle & Costerton, 1991; Stewart & Costerton, 2001; Stewart, 2002; Leriche et al., 2003; Saravanan et al., 2006). Therefore, the ability to destroy these living organisms is critical and the problem demands the development of alternative techniques. The use of gas-discharge plasmas potentially offers a good alternative to conventional sterilization methods, since plasmas contain a mixture of charged particles, chemically reactive species and UV radiation, which are effective in the destruction of individual micro-organisms (Laroussi, 1996; Moisan et al., 2001, 2002; Purevdorj et al., 2003). Gas-discharge plasmas are generated by supplying energy to a neutral gas, which causes the formation of charge carriers. Electrons, ions and free radicals are produced in the gas phase when electrons of sufficient energy collide with the neutral atoms and molecules in the feed gas. The most commonly used method of generating plasmas is by applying an electric field to a neutral gas (Conrads & Schmidt, 2000). Any volume of gas always contains a few electrons and ions that are formed, for example, as the result of interaction with cosmic rays or radioactive radiation. These free-charge carriers are accelerated by the electric field, and new charged particles are created when these carriers collide with atoms and molecules in the gas or with the surfaces of the electrodes. This process leads to an avalanche of charged particles that is eventually balanced by charged carrier losses, so that steady-state plasma is created.
Research on plasma-based sterilization and decontamination has been extensive for the past 15 years. Plasmas can be classified in terms of the pressure of the operating gas as low-pressure plasmas (1–10 mTorr range; 0.133–1.33 Pa), medium-pressure plasmas (0.1–10 Torr range; 13.3 Pa–1.33 kPa) and atmospheric pressure plasmas. The advantage of using atmospheric pressure plasmas is the possibility of obtaining the active agents mentioned above at relatively low temperatures (≤50 °C) without the need for a vacuum system (Montie et al., 2000). Furthermore, plasma sterilization is safe, both for the operator and the patient (Moisan et al., 2001). In addition, it is likely that synergistic effects among the active agents, such as charged particles, chemically reactive species and UV radiation, result in plasma being a more effective sterilization method (Lerouge et al., 2001; Moisan et al., 2001, 2002). These agents are well known to cause cell damage or cell death in micro-organisms exposed to them even for short periods. Park et al. (2003) reported bacterial disruption within 20 s of exposure to an argon plasma discharge. Purevdorj et al. (2003) reported similar results for spore-forming Bacillus pumilus. In this case, spore mortality varied depending on the composition of the gas feed and was higher with moisturized air plasma, suggesting that the inactivation may occur through hydroxyl free radicals generated from water molecules. Atmospheric pressure plasma applied to Bacillus subtilis reduced c.f.u. by four orders of magnitude for plasma exposure times of <10 min (Becker et al., 2002; Panikov et al., 2002). More recently, decimal reduction time (D) values of 2 s to 5.5 min have been reported for a wide variety of micro-organisms (Park et al., 2007), including both bacteria and fungi (Halfmann et al., 2007). The fact that sterilization by gas-discharge plasmas is at least as effective as, if not more effective than, sterilization by other methods which use a single killing agent suggests that there are important synergistic effects caused by the simultaneous and/or sequential effects of radiation, ions, electrons and reactive radicals on micro-organisms. These results clearly indicate that sterilization by plasmas has very attractive features in terms of effectiveness and practicality.
Therefore, numerous studies have demonstrated the effectiveness of gas-discharge plasmas for killing planktonic micro-organisms. However, to our knowledge, there are few reports about the use of plasma for biofilm disinfection or inactivation (Akishev et al., 2005; Brelles-Mariño et al., 2005; Abramzon et al., 2006; Kamgang et al., 2007). Traditionally, the effectiveness of plasma as a bacterial killing agent has been measured by counting the c.f.u. of a plasma-treated culture and calculating the number of surviving cells (Kelly-Wintenberg et al., 2000; Laroussi, 2002; Akishev et al., 2005; Brelles-Mariño et al., 2005; Gallagher et al., 2005; Abramzon et al., 2006; Kamgang et al., 2007). This approach relies on culturable cells alone, and does not take into account cells that might still be alive, but non-culturable, after plasma treatment. The objective of the present study was to achieve a better understanding of plasma-assisted biofilm inactivation by incorporating a variety of complementary techniques, including DNA and ATP determination together with atomic force microscopy (AFM) and fluorescence microscopy. These techniques allow us to determine the viability of biofilm-forming cells and their morphological changes after plasma treatment. In this paper we report the presence of living biofilm-forming bacterial cells after plasma treatment. Our results suggest that cells go through sequential physiological and morphological changes before becoming inactivated by plasma. Our study has important implications for the application of plasma to biofilms and indicates that longer treatments are necessary to ensure complete inactivation/sterilization.
Biofilm growth and plasma treatment.Biofilms were produced in 96-well polystyrene microplates (Nunclon Δ Surface, Nunc) by adding 200 µl of a bacterial suspension of Chromobacterium violaceum CV026 (McClean et al., 1997) with an OD650 of 1.0. This strain was chosen based on preliminary experiments that showed that it produces a thick biofilm ring in agitated cultures. Bacteria were grown overnight in TY (tryptone–yeast extract) (Beringer, 1974) liquid broth at 28 °C. Microplates were incubated at 28 °C without shaking for 4 or 7 days. After incubation, unbound planktonic bacteria were removed by rinsing the wells twice with 100 µl sterile distilled water. Plates were subjected to gas-discharge plasmas for various exposure times (5, 10, 15, 30 and 60 min, unless otherwise stated) under sterile conditions. A control without plasma treatment (0 min exposure time) was included. Bacteria were suspended in 200 µl sterile distilled water, microplate lids were replaced and the cells were then disaggregated by a 5 min room temperature sonication treatment in a sonicator bath. Bacteria were then serially diluted and plated in duplicate on TY agar medium. Plates were incubated for 1 day at 28 °C and c.f.u. were counted.
Plasma generation and conditions.
A gas-discharge plasma was produced by using an Atomflo 250 reactor that employs a capacitively coupled electrode design (Surfx Technologies). An atmospheric pressure plasma jet was generated by using a He flow of 20.4 l min–1, a secondary gas flow (N2) of 0.305 l min–1 and an input power of approximately 4.8 W. Both gases were industrial grade. The plasma applicator was mounted such that the showerhead was only 0.7 cm away from the biofilm.
DNA determination.
Four-day-old C. violaceum biofilms were produced in eight-well chambered coverglasses (Lab-Tec chambered coverglass, Nunc #15541), processed, and subjected to plasma treatment for 0, 5 and 20 min. A 750 µl volume of 1x Tris/acetate/EDTA (TAE) buffer (pH 8.0) was added to each well and after 15 min the content of each well was centrifuged at 10 000 r.p.m. for 5 min. A260 and A280 of the supernatants were determined using a Shimadzu BioSpec-mini spectrophotometer.
Cell viability determination
ATP estimation (BacTiter-Glo microbial cell viability assay).
Four-day-old C. violaceum CV026 biofilms were produced as described above and subjected to plasma treatment for 0 (control), 5, 60 and 240 min, followed by sonication and resuspension. A 100 µl volume of the bacterial suspension was used to determine cell viability with the BacTiter-Glo microbial cell viability assay (Promega) according to the manufacturer's instructions. A control with no cells was included. Luminescence was measured with a Turner TD-20/20 luminometer.
Fluorescence microscopy.
Four-day-old C. violaceum biofilms were produced in eight-well chambered coverglasses (Lab-Tec chambered coverglass, Nunc #15541), processed, and subjected to plasma treatment as described above. Biofilms were disaggregated by a 5 min room-temperature sonication treatment in a sonicator bath. Biofilm-forming bacterial cells were then resuspended and subjected to the LIVE/DEAD BacLight Bacterial Viability kit (Promega) according to the manufacturer's instructions. Stained cells were used to prepare smears on poly-L-lysine-coated glass slides. Samples were visualized with an Olympus BX61 fluorescence microscope.
AFM.
Biofilms were grown in 96-well plates, treated with plasma for 0, 5 and 60 min, and processed as indicated above. Bacterial suspensions were used to prepare smears on glass slides. The smears were air-dried and atomic force microscope images were obtained in air in intermittent contact mode using a Quesant Instruments Universal Scanning Probe Microscope. Commercial silicon cantilevers from MikroMasch were employed with resonant frequencies between 150 and 190 kHz and spring constants from 25 to 60 N m–1. To identify appropriate areas for imaging, an optical microscope was first used to locate regions where the density of bacteria and other biomaterials was low enough to avoid multilayered clusters of organisms. The sample slide was then adjusted with a micromechanical stage manipulator to position the AFM tip over the area of interest. In this way, individual bacteria could be imaged on a flat glass background, allowing unambiguous identification. For each slide, at least seven widely separated regions were imaged to obtain a representative sample and ensure reproducibility.
Table 1. Percentage of C. violaceum CV026 biofilm-forming cells inactivated after various plasma exposure times Results are the mean±SD of three independent experiments.
To rule out effects of gas flow on biofilms, preliminary experiments were carried out to compare plasma-treated biofilm to biofilm exposed to a flow of gas in the absence of plasma (plasma source turned off). Although the flow of gas dried out cells and caused a decrease in the number of c.f.u. of about 5 to 10 %, this decrease was much smaller than the decrease produced by plasma (results not shown). Therefore, cell inactivation is due to plasma treatment and not due to excessive drying of cells by the gas flow.
We have previously reported the rotational temperatures of plasma species and calculated a gas temperature of 52 °C at the tip of the plasma applicator (Abramzon et al., 2006). To determine the temperature that impacts the biofilm and to rule out the effect of temperature on biofilm inactivation, a K-type thermocouple was placed within an individual well of the 96-well plate, 0.7 cm away from the plasma showerhead. Equilibrium temperatures of 22–25 °C were reached within a few minutes, and remained constant over time, after applying the plasma to an empty well. Therefore, temperature is not responsible for biofilm inactivation.
The removal efficiency of a particular procedure can be assessed by determining the decimal reduction time (D value) (ISO, 1994, 2000); that is, the time required to reduce an original concentration of micro-organisms by 90 %. This parameter was originally defined for the thermal killing of micro-organisms by autoclaving. D values for plasma-treated planktonic cells and spores are in the range of 20 s to 10 min (Laroussi et al., 2000; Laroussi, 2002; Moisan et al., 2002). For C. violaceum biofilms, we have previously shown that the kinetics of biofilm inactivation have a double-slope behaviour (Abramzon et al., 2006). In that study, the survivor curve [log(c.f.u. ml–1) versus exposure time] showed a first phase consisting of a rapid initial decline in c.f.u. ml–1 and a D value (D1) of 2.3±0.34 min followed by a much slower decline (second phase) with a D value (D2) of 37.4±12.1 min, which was longer than those reported for the inactivation of planktonic organisms, suggesting a more complex inactivation mechanism for biofilms. Bi- and triphasic behaviours for plasma-assisted killing of free-living micro-organisms and spores have been reported before. Two-slope behaviour with a smaller D value for shorter exposure times and a higher D value for longer exposure times has been reported for Staphylococcus aureus, Escherichia coli and P. aeruginosa. These biphasic curves have been explained as being due to damage to the cell membrane produced by the plasma reactive species in the first phase, followed by the penetration of the reactive species in the second phase, causing cell death (Kelly-Wintenberg et al., 1998; Laroussi et al., 2000; Critzer et al., 2007; Kayes et al., 2007). In the case of plasma-assisted spore killing, two- and three-slope survivor curves have also been reported (Moisan et al., 2002). The process involves the action of UV radiation on isolated spores or on the first layer of stacked spores, followed by a further erosion of the various materials (coats, debris, dead spores) that cover still-living spores, therefore slowing down the process of DNA destruction of those spores by UV irradiation. We previously hypothesized that in our case, and in analogy to spores, the initial rapid decline of c.f.u. ml–1 might have been due to the destruction of the upper layers of micro-organisms, easily available and more exposed to plasma. After this rapid removal, plasma had to penetrate layers of cell debris and dead cells before reaching the inner portion of the biofilm (Abramzon et al., 2006).
In a previous work we studied the chemistry of the generated plasma by spectrometry. We reported the presence of NO γ-bands at ∼250 nm and an OH band at ∼309 nm (Abramzon et al., 2006). These reactive species have a direct impact on micro-organisms, especially on their outermost membranes (Laroussi et al., 2000; Laroussi & Leipold, 2004; Laroussi, 2005). The OH radical is very reactive within the cell and will react with most biomolecules (Singh & Singh, 1982). Oxidative damage to membranes and cell walls is due to damage to either lipids or proteins. Oxidative stress has been shown to cause peroxidation of lipids, producing shortened fatty acids and therefore loss of the membrane structural integrity (Farr & Kogoma, 1991). A similar process may occur in the lipopolysaccharide of the outer membrane of Gram-negative cells. Interaction of oxygen radicals with proteins leads to the oxidation of several amino acids. Membrane proteins and amino acids from the peptidoglycan are susceptible to attack by OH radicals. It has been reported that NO adds to the lethality of the process (Laroussi, 2002). In summary, the presence of these radicals compromises the function and viability of the membrane and the cell wall. The plasma conditions chosen for our experiments were those that maximized OH and NO emissions and produced stable plasma (Abramzon et al., 2006).
Laroussi and others (Laroussi, 2002; Laroussi et al., 2001a, b) have observed cytoplasm leakage followed by total cell fragmentation when planktonic E. coli cells are subjected to plasma discharges for more than 30 s. The spectrophotometric measurement of bacterial extracellular media after plasma treatment has been reported by Kelly-Wintenberg et al. (1999) and Montie et al. (2000). An increase in A260 is considered to be evidence of leakage of UV-absorbing molecules such as nucleic acids and proteins from the cytoplasm into the extracellular fluid. In order to determine whether our decrease in the number of culturable cells was due to cell breakage and cytoplasmic leakage, we carried out experiments treating four-day-old bacterial biofilms with plasma for 0, 5 and 20 min and measuring A260 and A280. The ratio of A260 and A280 was 1.42, 1.48 and 1.46 for 0, 5 and 20 min treatment, respectively (average of two independent experiments). These results do not indicate a release of DNA into the extracellular fluid. Therefore, in our experiments, there is no indication of a release of the cytoplasmic content into the medium after plasma treatment, suggesting that the cell membranes are still intact after 20 min of plasma treatment.
In order to measure viability of biofilm-forming cells after plasma treatment, two approaches were used: the indirect measurement of ATP production, and fluorescence microscopy using a combination of dyes that target dead and living cells. ATP production was indirectly measured by using the BacTiter-Glo microbial cell viability assay. This assay measures a luminescent signal that is proportional to the amount of ATP present, which is directly proportional to the number of cells in the culture. ATP is an indicator of metabolically active cells. Fig. 1 shows the relative luminescent signal for biofilm-forming bacteria after 0, 5, 60 and 240 min of plasma treatment. As can be seen from the results, the signal, and therefore the amount of ATP, reached a peak at 5 min and decreased at higher exposure times. Although viable cells may still exist after 60 min of exposure, metabolic activity decreases further at longer exposure times, indicating loss of viability. These results indicate that biofilm-forming bacterial cells respond to the stress produced by the plasma treatment. At short exposure times, bacteria respond either by increasing respiration and thus ATP production, or by uncoupling ATP production from respiration as a way of coping with the stress. At longer plasma exposure times, bacteria succumb to oxidative stress and are no longer able to respond to it, resulting in loss of viability.
|
Another way of measuring the viability of cells after plasma treatment involves monitoring the membrane integrity of the cells by fluorescence microscopy. Fig. 2 shows the fluorescent images of biofilm-forming cells stained with the LIVE/DEAD BacLight Bacterial Viability test after 0, 5 and 60 min of plasma treatment. The assay utilizes a mixture of SYTO 9 green fluorescent nucleic acid stain and the red fluorescent nucleic acid stain propidium iodide. These stains differ in their ability to penetrate healthy bacterial cells. When used alone, SYTO 9 labels bacteria with both intact and damaged membranes. In contrast, propidium iodide penetrates only bacteria with damaged membranes, competing with SYTO 9 for nucleic acid binding sites when both dyes are present. When mixed in recommended proportions, SYTO 9 and propidium iodide produce green fluorescent staining of bacteria with intact cell membranes and red fluorescent staining of bacteria with damaged membranes. Therefore, the ratio of green to red fluorescence intensities provides a quantitative index of bacterial viability. As can be seen in the images, biofilm-forming cells were predominantly green for the control and for the 5 min treatment, although in the latter there were some red cells as well. In the sample obtained after 60 min of plasma treatment, most of the cells were stained red and were therefore dead.
|
Fig. 3 shows AFM images for C. violaceum biofilm-forming cells treated with plasma for different exposure times, as indicated in Methods. All images display a 5x5 µm2 scan of samples plasma-treated for 0 min (control, Fig. 3a), 5 min (Fig. 3c, d, e) and 60 min (Fig. 3b) and were obtained from widely separated regions of the sample. Fig. 3(a) shows aggregates with the typical rod-shaped morphology of C. violaceum cells of about 2 µm in length. After 60 min of plasma treatment (Fig. 3b), bacterial cell images revealed broken or amorphous structures that were barely recognizable as bacterial remnants. These results for the 60 min plasma-treated sample were universal in that no recognizable intact bacterial cells were obtained in any of the 60 min images. This included images acquired over 10 widely separated regions of the sample. The 5 min plasma-treated samples showed different types of cell damage. Fig. 3(c) shows mostly intact cells in aggregates with only a few damaged and some undersized cells. Fig. 3(d) shows three two-layered cells, and an upper rough and a lower smooth layer (which was verified by cross sections of these images). Fig. 3(e) shows regular structures but distinctly different shapes and sizes from the normal bacterial cells. These rounded structures are approximately 0.5 µm in diameter and resemble spheroplasts or protoplasts that might have arisen from cell wall/outer membrane removal due to plasma treatment.
|
The AFM results clearly indicated that biofilm-forming bacteria go through sequential morphological changes after plasma treatment. At shorter exposure times, bacterial cell walls may undergo modifications ranging from minimal changes (as evidenced by cells with rougher surfaces, Fig. 3d) to putative loss of cell walls, leading to the production of spheroplasts as suggested by Fig. 3(e). In another experiment, we verified the relative roughness of cells such as those in Fig. 3(d) by examining image cross sections and analysing the standard deviation of the surface height. These surface features were consistent with cells undergoing damage and were observed in a small percentage of the high-resolution 5 min plasma-exposure scans (Vandervoort et al., 2008). After 60 min of plasma treatment, broken or amorphous structures were obtained. Cells that look damaged/lacerated under the AFM will be imaged as dead cells by fluorescence microscopy. Therefore, combining the results from fluorescence microscopy and AFM, it is clear that biofilm-forming cells undergo little change in cell morphology for the 5 min plasma treatment but incur major cell damage for 60 min exposure times.
The DNA spectrophotometric measurements, the colorimetric assays with vital dyes, and the viability tests show that although the c.f.u. count was very low, there were still living cells at short exposure times. It is possible that plasma-mediated biofilm inactivation proceeds through a first step in which bacterial cells enter a viable-but-nonculturable (VBNC) state, followed by a second step, characterized by a higher D value, in which cells are actually killed. This could explain the two-slope kinetics observed in our previous experiments. The VBNC state is a survival mechanism of bacteria facing environmental stress conditions, and has been reported for many Gram-negative organisms (Oliver, 1993; Colwell & Huq, 1994; Day & Oliver, 2004; Roszak & Colwell, 1987). Bacteria enter into this dormant state in response to one or more environmental stresses, which might otherwise ultimately be lethal to the cell. Plasma contains reactive agents including oxidative agents and radicals that are well known to cause environmental stress in bacteria. Changes in cell membrane composition have been reported for bacteria in the VBNC state (Oliver, 1993). Morphological changes have recently been reported for Edwarsiella tarda cells in the VBNC state; results show that when cells enter the VBNC state, they gradually change in shape from short rods to coccoid and decrease in size compared to the normal cells (Du et al., 2007). These findings are consistent with our AFM findings. It has also been demonstrated that VBNC cells are active in metabolism (Zimmermann et al., 1978), and our results with the cell viability assays show that luminescence, and therefore ATP production, reaches a peak at 5 min after plasma treatment, indicating that cells are metabolically active after that exposure time.
Our results are also compatible with the hypothesis that cell walls are damaged after plasma treatment, producing spheroplasts that are smaller in size. These spheroplasts are non-culturable but still alive, since they retain an intact cell membrane. Thus, no release of intracellular UV-absorbing products into the extracellular fluid is measured. Further research is required in order to validate this hypothesis.
Our results clearly show that bacterial biofilms can be inactivated by using gas-discharge plasma, and indicate the potential of plasma as an alternative sterilization method. Research is being carried out in our laboratories to determine the plasma conditions and chemistry necessary to achieve complete biofilm inactivation. However, these results also indicate that viability experiments should always be carried out before drawing the conclusion, based solely on measurement of culturable cells, that plasma is useful to kill cells.
This work was partially supported by the California State University Program for Education and Research in Biotechnology (CSuperb). Funding for AFM was provided by the National Science Foundation Nanotechnology Undergraduate Education Program, award #0406533. J. C. J. is indebted to the Howard Hughes Medical Institute for a fellowship.Edited by: C. Picioreanu
References
Akishev, Y. S., Grushin, M. E., Karal'nik, V. B., Monich, A. E., Pan'kin, M. V., Trushkin, N. I., Kholodenko, V. P., Chugunov, V. A., Zhirkova, N. A. & other authors (2005). Sterilization/decontaminations of physiological solution and dry surface by non-thermal plasma created in bubbles and jet. In Proceedings of the 2nd International Workshop on Cold Atmospheric Pressure Plasmas, pp. 69–72. ISBN: 908086692X.
Becker, K., Abramzon, N., Panikov, S., Crowe, R., Ricatto, P. J. & Christodoulatos, C. (2002). Destruction of bacteria using an atmospheric-pressure dielectric capillary electrode discharge plasma. In Proceedings of the 29th International Conference on Plasma Science, Banff, Canada, p. 253. ISBN: 0–7803–7407-X.
Beringer, J. E. (1974). R factors transfer in Rhizobium leguminosarum. J Gen Microbiol 84, 188–198.
Brelles-Mariño, G., Joaquin, J. C., Bray, J. & Abramzon, N. (2005). Gas discharge plasma as a novel tool for biofilm destruction. In Proceedings of the 2nd International Workshop on Cold Atmospheric Pressure Plasmas, pp. 69–72. ISBN: 908086692X.
Colwell, R. R. & Huq, A. (1994). Vibrios in the environment: viable but nonculturable Vibrio cholerae. In Vibrio cholerae and Cholera: Molecular Global Perspectives. Edited by T. Kaye. Washington DC: American Society for Microbiology.
Conrads, H. & Schmidt, M. (2000). Plasma generation and plasma source. Plasma Sources Sci Technol 9, 441–454.[CrossRef]
Costerton, J. W., Lewandowski, Z., Caldwell, D. E., Korber, D. R. & Lappin-Scott, H. M. (1995). Microbial biofilms. Annu Rev Microbiol 49, 711–745.[CrossRef][Medline]
Costerton, J. W., Stewart, P. S. & Greenberg, E. P. (1999). Bacterial biofilms: a common cause of persistent infections. Science 284, 1318–1322.
Critzer, F. J., Kelly-Wintenberg, K., South, S. L. & Golden, D. A. (2007). Atmospheric plasma inactivation of foodborne pathogens on fresh produce surfaces. J Food Prot 70, 2290–2296.[Medline]
Davies, D. G., Parske, M. R., Pearson, J. P., Iglewski, B. H., Costerton, J. W. & Greenberg, E. P. (1998). The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science 280, 295–298.
Day, A. P. & Oliver, J. D. (2004). Changes in membrane fatty acid composition during entry of Vibrio vulnificus in the viable but nonculturable state. J Microbiol 42, 69–73.[Medline]
De Kievit, T. R., Gillis, R., Marx, S., Brown, C. & Iglewski, B. H. (2001). Quorum-sensing genes in Pseudomonas aeruginosa biofilms: their role and expression patterns. Appl Environ Microbiol 67, 1865–1873.
Du, M., Chen, J., Zhang, X., Li, A., Li, Y. & Wang, Y. (2007). Retention of virulence in a viable but nonculturable Edwardsiella tarda isolate. Appl Environ Microbiol 73, 1349–1354.
Elder, M. J., Stapleton, F., Evans, E. & Dart, J. K. (1995). Biofilm-related infections in ophthalmology. Eye 9, 102–109.[Medline]
Ell, S. R. (1996). Candida, the cancer of silastic. J Laryngol Otol 110, 240–242.[Medline]
Farr, S. B. & Kogoma, T. (1991). Oxidative stress responses in Escherichia coli and Salmonella typhimurium. Microbiol Rev 55, 561–585.
Gallagher, M., Friedman, G., Gutsol, A. & Fridman, A. (2005). Non-thermal plasma application in air sterilization. In 17th International Symposium on Plasma Chemistry, Toronto, Canada, pp. 1056–1057.
Halfmann, H., Bibinov, N., Wunderlich, J. & Awakowicz, P. (2007). A double inductively coupled plasma for sterilization of medical devices. J Phys D Appl Phys 40, 4145–4154.[CrossRef]
Heydorn, A., Nielsen, A. T., Hentzer, M., Sternberg, C., Givskov, M., Ersboll, B. K. & Molin, S. (2000). Quantification of biofilms structures by the novel computer program COMSTAT. Microbiology 146, 2395–2407.
Hoyle, B. D. & Costerton, J. W. (1991). Bacterial resistance to antibiotics: the role of biofilms. Prog Drug Res 37, 91–105.[Medline]
ISO (1994). International Standard, ISO 11134. Sterilization of health care products. Requirements for validation and routine control – industrial moist heat sterilization.
ISO (2000). International Standard, ISO 14937. Sterilization of health care products. General requirements for characterization of a sterilizing agent and the development, validation and routine control of a sterilization process for medical devices.
Kamgang, J. O., Briandet, R., Herry, J. M., Brisset, J. L. & Naïtali, M. (2007). Destruction of planktonic, adherent and biofilm cells of Staphylococcus epidermidis using a gliding discharge in humid air. J Appl Microbiol 103, 621–628.[Medline]
Kayes, M. M., Critzer, F. J., Kelly-Wintenberg, K., Roth, J. R., Montie, T. C. & Golden, D. A. (2007). Inactivation of foodborne pathogens using a one atmosphere uniform glow discharge plasma (OAUGDP®). Foodborne Pathog Dis 4, 50–59.[CrossRef][Medline]
Kelly-Wintenberg, K., Montie, T. C., Brickman, C., Roth, J. R. & Tsai, P. P. Y. (1998). Room temperature sterilization of surfaces and fabrics with one atmosphere uniform glow discharge plasma. J Ind Microbiol Biotechnol 20, 69–74.[CrossRef][Medline]
Kelly-Wintenberg, K., Hodge, A., Montie, T. C., Deleanu, L., Sherman, D. M., Roth, J. R., Tsai, P. & Wadsworth, L. (1999). Use of a one atmosphere uniform glow discharge plasma to kill a broad spectrum of microorganisms. J Vac Sci Technol A 17, 1539–1544.[CrossRef]
Kelly-Wintenberg, K., Sherman, D. M., Tsai, P. P.-Y., Gadri, R. B., Karakaya, F., Chen, Z., Roth, J. R. & Montie, T. C. (2000). Air filter sterilization using a one atmosphere uniform glow discharge plasma (the volfilter). IEEE Trans Plasma Sci IEEE Nucl Plasma Sci Soc 28, 64–71.
Kolter, R. & Losick, R. (1998). One for all and all for one. Science 280, 226–227.
Laroussi, M. (1996). Sterilization of contaminated matter with an atmospheric pressure plasma. IEEE Trans Plasma Sci IEEE Nucl Plasma Sci Soc 24, 1188–1191.
Laroussi, M. (2002). Nonthermal decontamination of biological media by atmospheric-pressure plasmas: review, analysis, and prospects. IEEE Trans Plasma Sci IEEE Nucl Plasma Sci Soc 30, 1409–1415.
Laroussi, M. (2005). Low temperature plasma-based sterilization/decontamination of biological matter. In Proceedings of the 2nd International Workshop on Cold Atmospheric Pressure Plasmas, pp. 18–27.
Laroussi, M. & Leipold, F. (2004). Evaluation of the roles of reactive species, heat, and UV radiation in the inactivation of bacterial cells by air plasmas at atmospheric pressure. Int J Mass Spectrom 233, 81–86.[CrossRef]
Laroussi, M., Alexeff, I. & Kang, W. (2000). Biological decontamination by non-thermal plasmas. IEEE Trans Plasma Sci IEEE Nucl Plasma Sci Soc 28, 184–188.
Laroussi, M., Richardson, J. P. & Dobbs, F. C. (2001a). Biochemical pathways in the interaction of non-equilibrium plasma with bacteria. In Proceedings of ElectroMed 2001, 2nd International Symposium on Nonthermal Medical/Biological Treatments using Electromagnetic Fields, Portsmouth, VA, 20–23 May, 2001, pp. 33–34.
Laroussi, M., Richardson, J. P. & Dobbs, F. C. (2001b). Biochemical and morphological effects of non-equilibrium atmospheric pressure plasmas on bacteria. In Proceedings of the 15th International Symposium on Plasma Chemistry (ISPC15), Orleans, France, July 9–13, 2001, pp. 729–734.
Leriche, V., Briandet, R. & Carpentier, B. (2003). Ecology of mixed biofilms subjected daily to a chlorinated alkaline solution: spatial distribution of bacterial species suggests a protective effect of one species to another. Environ Microbiol 5, 64–71.[CrossRef][Medline]
Lerouge, S., Wertheimer, M. R. & Yahia, L'H. (2001). Plasma sterilization: a review of parameters, mechanisms, and limitations. Plasmas Polym 6, 175–188.[CrossRef]
Marsh, E. J., Luo, H. & Wang, H. (2003). A three-tiered approach to differentiate Listeria monocytogenes biofilm-forming abilities. FEMS Microbiol Lett 228, 203–210.[CrossRef][Medline]
Matsumoto, S., Terada, A., Aoi, Y., Tsuneda, S., Alpkvist, E., Picioreanu, C. & van Loosdrecht, M. C. M. (2007). Experimental and simulation analysis of community structure of nitrifying bacteria in a membrane-aerated biofilm. Water Sci Technol 55, 283–290.[Medline]
Massol-Deyá, A. A., Whallon, J., Hickey, R. F. & Tiedje, J. M. (1995). Channel structures in aerobic biofilms of fixed-film reactors treating contaminated groundwater. Appl Environ Microbiol 61, 769–777.
McClean, K. H., Winson, M. K., Fish, L., Taylor, A., Chhabra, S. R., Camara, M., Daykin, M., Lamb, J. H., Swift, S. & other authors (1997). Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology 143, 3703–3711.
Moisan, M., Barbeau, J., Moreau, S., Pelletier, J., Tabrizian, M. & Yahia, L. H. (2001). Low-temperature sterilization using gas plasmas: a review of the experiments and an analysis of the inactivation mechanisms. Int J Pharm 226, 1–21.[CrossRef][Medline]
Moisan, M., Barbeau, J., Crevier, M.-C., Pelletier, J., Philip, N. & Saoudi, B. (2002). Plasma sterilization: methods and mechanisms. Pure Appl Chem 74, 349–358.[CrossRef]
Montie, C., Kelly-Wintenberg, K. & Roth, J. R. (2000). An overview of research using the one atmosphere uniform glow discharge plasma (OAUGDP) for sterilization of surfaces and materials. IEEE Trans Plasma Sci IEEE Nucl Plasma Sci Soc 28, 41–50.
Murga, R., Stewart, P. S. & Daly, D. (1995). Quantitative analysis of biofilm thickness variability. Biotechnol Bioeng 45, 503–510.[CrossRef][Medline]
Oliver, J. D. (1993). Formation of viable but nonculturable cells. In Starvation in Bacteria, pp. 239–272. Edited by S. Kjelleberg. New York: Plenum Press.
Panikov, N. S., Paduraru, S., Crowe, R., Ricatto, P. J., Christodoulatos, C. & Becker, K. (2002). Destruction of Bacillus subtilis cells using an atmospheric-pressure capillary plasma electrode discharge plasma. IEEE Trans Plasma Sci IEEE Nucl Plasma Sci Soc 30, 1424–1428.
Park, B. J., Lee, D. H., Park, J. C., Lee, I. S., Lee, K. Y., Chun, M. S. & Chung, K. H. (2003). Sterilization using a microwave-induced argon plasma system at atmospheric pressure. Phys Plasmas 10, 4539–4544.[CrossRef]
Park, B. J., Takatori, K., Lee, M. H., Han, D.-W., Woo, Y. I., Son, H. J., Kim, J. K., Chung, K.-H., Hyun, S. O. & Park, J.-C. (2007). Escherichia coli sterilization and lipopolysaccharide inactivation using microwave-induced argon plasma at atmospheric pressure. Surf Coat Tech 201, 5738–5741.[CrossRef]
Picioreanu, C., van Loosdrecht, M. C. M. & Heijnen, J. J. (2000). Modelling and predicting biofilm structure. In Community Structure and Co-operation in Biofilms, pp. 129–166. Edited by D. G. Allison, P. Gilbert, H. M. Lappin-Scott & M. Wilson. Cambridge, UK: Cambridge University Press.
Purevdorj, D., Igura, N., Ariyada, O. & Hayakawa, I. (2003). Effect of feed gas composition of gas discharge plasmas on Bacillus pumilus spore mortality. Lett Appl Microbiol 37, 31–34.[CrossRef][Medline]
Roszak, D. B. & Colwell, R. R. (1987). Survival strategies of bacteria in the natural environment. Microbiol Rev 51, 365–379.
Russo, D. M., Williams, A., Edwards, A., Posadas, D. M., Finnie, C., Dankert, M., Downie, J. A. & Zorreguieta, A. (2006). Proteins exported via the PrsD-PrsE type I secretion system and the acidic exopolysaccharide are involved in biofilm formation by Rhizobium leguminosarum. J Bacteriol 188, 4474–4486.
Saravanan, P., Nancharaiah, Y. V., Venugopalan, V. P., Rao, T. S. & Jayachandran, S. (2006). Biofilm formation by Pseudoalteromonas ruthenica and its removal by chlorine. Biofouling 22, 371–378.[CrossRef][Medline]
Singh, A. & Singh, H. (1982). Time-scale and nature of radiation-biological damage: approaches to radiation protection and post-irradiation therapy. Prog Biophys Mol Biol 39, 69–107.[CrossRef][Medline]
Stewart, P. S. (2002). Mechanisms of antibiotic resistance in bacterial biofilms. Int J Med Microbiol 292, 107–113.[CrossRef][Medline]
Stewart, P. S. & Costerton, J. W. (2001). Antibiotic resistance of bacteria in biofilms. Lancet 358, 135–138.[CrossRef][Medline]
Stewart, P. S., Peyton, B. M., Drury, W. J. & Murga, R. (1993). Quantitative observations of heterogeneities in Pseudomonas aeruginosa biofilms. Appl Environ Microbiol 59, 327–329.
Stoodley, P., Boyle, J. D., Dodds, I. & Lappin-Scott, H. M. (1997). Consensus model of biofilm structure. In Biofilms: Community Interactions and Control, pp. 1–9. Edited by J. W. T. Wimpenny, P. S. Gilbert, H. M. Lappin-Scott & M. Jones. Cardiff, UK: Bioline.
Stoodley, P., Sauer, K., Davies, D. G. & Costerton, J. W. (2002). Biofilms as complex differentiated communities. Annu Rev Microbiol 56, 187–209.[CrossRef][Medline]
Tolker Nielsen, T., Brinch, U. C., Ragas, P. C., Andersen, J. B., Jacobsen, C. S. & Molin, S. (2000). Development and dynamics of Pseudomonas sp. biofilms. J Bacteriol 182, 6482–6489.
Vandervoort, K., Abramzon, N. & Brelles-Mariño, G. (2008). Plasma interactions with bacterial biofilms as visualized through atomic force microscopy. IEEE Trans Plasma Sci IEEE Nucl Plasma Sci Soc 36, 1296–1297.
Zimmermann, R., Iturriaga, R. & Becker-Birek, J. (1978). Simultaneous determination of the total number of aquatic bacteria and the number thereof involved in respiration. Appl Environ Microbiol 36, 926–935.
Received 17 June 2008; revised 11 November 2008; accepted 4 December 2008.