Bacteroidetes

Sphingobacterium kyonggiense sp. nov., isolated from chloroethene-contaminated soil, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium mizutaii

  • Department of Bio‐engineering, Division of Natural Science, Kyonggi University, 94-6 Iui-dong Yeongtong-gu, Suwon 433-760, Republic of Korea
  • Correspondence
    Sang-Seob Lee sslee{at}kyonggi.ac.kr
  • International Journal of Systematic and Evolutionary Microbiology 2012; 62(Pt 11):2559–2564 · https://doi.org/10.1099/ijs.0.024737-0

    View at publisher PubMed

    Abstract

    A Gram-reaction-negative, strictly aerobic, rod-shaped, non-motile strain, designated 2-1-2T, was isolated from perchloroethylene/trichloroethene-contaminated soil in Suwon, South Korea. A polyphasic approach was used to study the taxonomic position of strain 2-1-2T. Strain 2-1-2T showed highest 16S rRNA gene sequence similarities to Sphingobacterium daejeonense TR6-04T (97.9 %) and Sphingobacterium mizutaii ATCC 33299T (97.1 %); sequence similarities to other Sphingobacterium species were less than 93.0 %. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain 2-1-2T belonged to the clade formed by members of the genus Sphingobacterium in the family Sphingobacteriaceae. The G+C content of the genomic DNA was 36.6 mol%. Strain 2-1-2T showed the typical chemotaxonomic features of the genus Sphingobacterium, with the presence of a ceramide phosphorylethanolamine (CerPE-2) as the major ceramide, menaquinone 7 (MK-7) as the predominant respiratory quinone and iso-C15 : 0, iso-C17 : 0 3-OH and summed feature 3 (comprising iso-C15 : 0 2-OH and/or C16 : 1ω7c) as the major fatty acids. On the basis of phylogenetic inference, fatty acid profile and other phenotypic properties, and DNA–DNA relatedness, strain 2-1-2T represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium kyonggiense sp. nov. is proposed; the type strain is 2-1-2T ( = KEMC 2241-005T = JCM 16704T). Emended descriptions of Sphingobacterium daejeonense and Sphingobacterium mizutaii are also proposed.

    • The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain 2-1-2T is GU358699.

    • A supplementary figure is available with the online version of this paper.

    Abbreviations:
    AL
    aminolipid
    APL
    aminophospholipid
    CerPE
    ceramide phosphorylethanolamine
    CerPI
    ceramide phosphoryl-myo-inositol
    CerPM-1
    ceramide phosphoryl-1-β-mannose
    GL
    glycolipid
    GPL
    glycophospholipid
    PCE
    perchloroethylene
    PE
    phosphatidylethanolamine
    PL
    phospholipid
    TCE
    trichloroethene