Abstract
During the course of screening bacterial isolates as sources of as-yet unknown bioactive compounds with pharmaceutical applications, a chemo-organotrophic, Gram-negative bacterium was isolated from a soil sample taken from the Tejeda, Almijara and Alhama Natural Park, Granada, Spain. Strain F-278,770T was oxidase- and catalase-positive, aerobic, with a respiratory type of metabolism with oxygen as the terminal electron acceptor, non-spore-forming and motile by one polar flagellum, although some cells had two polar flagella. Phylogenetic analysis of the 16S rRNA, gyrB, rpoB and rpoD genes revealed that strain F-278,770T belongs to the Pseudomonas koreensis subgroup (Pseudomonas fluorescens lineage), with Pseudomonas moraviensis, P. koreensis, P. baetica and P. helmanticensis as its closest relatives. Chemotaxonomic traits such as polar lipid and fatty acid compositions and G+C content of genomic DNA corroborated the placement of strain F-278,770T in the genus Pseudomonas. DNA–DNA hybridization assays and phenotypic traits confirmed that this strain represents a novel species of the genus Pseudomonas, for which the name Pseudomonas granadensis sp. nov. is proposed. The type strain is F-278,770T ( = DSM 28040T = LMG 27940T).
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The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA, rpoB, rpoD and gyrB gene sequences of strain F-278,770T are HG764746, HG764747, HG764748 and HG764749, respectively.
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Six supplementary figures and two supplementary tables are available with the online Supplementary Material.
- Abbreviations:
- FAME
- fatty acid methyl ester
- HGT
- horizontal gene transfer
- ML
- maximum-likelihood
- MLSA
- multilocus sequence analysis
- MP
- maximum-parsimony
- NJ
- neighbour-joining