Issue table of contents

International Journal of Systematic and Evolutionary Microbiology — Volume 53, Issue 5

75 articles in this issue

Validation List No. 93

Valid publication of new names and new combinations previously effectively published outside the IJSEM

p. 1219–1220 https://doi.org/10.1099/ijs.0.02927-0

Notification that new names and new combinations have appeared in volume 53, part 3, of the IJSEM

p. 1221 https://doi.org/10.1099/ijs.0.02905-0

Gram-Positive Bacteria

Isolation of thermophilic Desulfotomaculum strains with methanol and sulfite from solfataric mud pools, and characterization of Desulfotomaculum solfataricum sp. nov.

Heleen P. Goorissen, Henricus T. S. Boschker, Alfons J. M. Stams, Theo A. Hansen

p. 1223–1229 https://doi.org/10.1099/ijs.0.02476-0

Methylocella silvestris sp. nov., a novel methanotroph isolated from an acidic forest cambisol

Dunfield, Peter F., Khmelenina, Valentina N., Suzina, Natalia E., Trotsenko, Yuri A., Dedysh, Svetlana N.

p. 1231 https://doi.org/10.1099/ijs.0.02481-0

Flavobacterium gelidilacus sp. nov., isolated from microbial mats in Antarctic lakes

Van Trappen, Stefanie, Mergaert, Joris, Swings, Jean

p. 1241 https://doi.org/10.1099/ijs.0.02583-0

Bosea minatitlanensis sp. nov., a strictly aerobic bacterium isolated from an anaerobic digester

Ouattara, Aboubakar S., Assih, Essokazi A., Thierry, Sebastien, Cayol, Jean-Luc, Labat, Marc, Monroy, Oscar, Macarie, Herve

p. 1247 https://doi.org/10.1099/ijs.0.02540-0

Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange-pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas

Busse, Hans-Jurgen, Denner, Ewald B. M., Buczolits, Sandra, Salkinoja-Salonen, Mirja, Bennasar, Antonio, Kampfer, Peter

p. 1253 https://doi.org/10.1099/ijs.0.02461-0

Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments

Gonzalez, Jose M., Covert, Joseph S., Whitman, William B., Henriksen, James R., Mayer, Frank, Scharf, Birgit, Schmitt, Rudiger, Buchan, Alison et al.

p. 1261 https://doi.org/10.1099/ijs.0.02491-0

Phylogenetic and physiological characterization of a heterotrophic, chemolithoautotrophic Thiothrix strain isolated from activated sludge

Rossetti, Simona, Blackall, Linda L., Levantesi, Caterina, Uccelletti, Daniela, Tandoi, Valter

p. 1271 https://doi.org/10.1099/ijs.0.02647-0

Arthrobacter koreensis sp. nov., a novel alkalitolerant bacterium from soil

Lee, Jung-Sook, Lee, Keun Chul, Pyun, Yu-Ryang, Bae, Kyung Sook

p. 1277 https://doi.org/10.1099/ijs.0.02492-0

Vitellibacter vladivostokensis gen. nov., sp. nov., a new member of the phylum Cytophaga-Flavobacterium-Bacteroides

Nedashkovskaya, Olga I., Suzuki, Makoto, Vysotskii, Mikhail V., Mikhailov, Valery V.

p. 1281 https://doi.org/10.1099/ijs.0.02302-0

Arenibacter troitsensis sp. nov., isolated from marine bottom sediment

Nedashkovskaya, Olga I., Suzuki, Makoto, Vysotskii, Mikhail V., Mikhailov, Valery V.

p. 1287 https://doi.org/10.1099/ijs.0.02384-0

Pedobacter cryoconitis sp. nov., a facultative psychrophile from alpine glacier cryoconite

Margesin, Rosa, Sproer, Cathrin, Schumann, Peter, Schinner, Franz

p. 1291 https://doi.org/10.1099/ijs.0.02436-0

Bacillus marisflavi sp. nov. and Bacillus aquimaris sp. nov., isolated from sea water of a tidal flat of the Yellow Sea in Korea

Yoon, Jung-Hoon, Kim, In-Gi, Kang, Kook Hee, Oh, Tae-Kwang, Park, Yong-Ha

p. 1297 https://doi.org/10.1099/ijs.0.02365-0

Tuberculosis in seals caused by a novel member of the Mycobacterium tuberculosis complex: Mycobacterium pinnipedii sp. nov.

Cousins, Debby V., Bastida, Ricardo, Cataldi, Angel, Quse, Viviana, Redrobe, Sharon, Dow, Sue, Duignan, Padraig, Murray, Alan et al.

p. 1305 https://doi.org/10.1099/ijs.0.02401-0

Anoxybacillus gonensis sp. nov., a moderately thermophilic, xylose-utilizing, endospore-forming bacterium

Belduz, Ali Osman, Dulger, Sabriye, Demirbag, Zihni

p. 1315 https://doi.org/10.1099/ijs.0.02473-0

Brevibacterium lutescens sp. nov., from human and environmental samples

Wauters, Georges, Avesani, Veronique, Laffineur, Kim, Charlier, Jacqueline, Janssens, Michele, Van Bosterhaut, Bernard, Delmee, Michel

p. 1321 https://doi.org/10.1099/ijs.0.02513-0

Desulfonatronum thiodismutans sp. nov., a novel alkaliphilic, sulfate-reducing bacterium capable of lithoautotrophic growth

Pikuta, Elena V., Hoover, Richard B., Bej, Asim K., Marsic, Damien, Whitman, William B., Cleland, David, Krader, Paul

p. 1327 https://doi.org/10.1099/ijs.0.02598-0

Rhodococcus tukisamuensis sp. nov., isolated from soil

Matsuyama, Hidetoshi, Yumoto, Isao, Kudo, Takuji, Shida, Osamu

p. 1333 https://doi.org/10.1099/ijs.0.02523-0

Ralstonia respiraculi sp. nov., isolated from the respiratory tract of cystic fibrosis patients

Coenye, Tom, Vandamme, Peter, LiPuma, John J.

p. 1339 https://doi.org/10.1099/ijs.0.02440-0

Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats

Bowman, John P., Nichols, Carol Mancuso, Gibson, John A. E.

p. 1343 https://doi.org/10.1099/ijs.0.02553-0

Transfer of Pseudomonas elongata Humm 1946 to the genus Microbulbifer as Microbulbifer elongatus comb. nov.

Yoon, Jung-Hoon, Kim, Hongik, Kang, Kook Hee, Oh, Tae-Kwang, Park, Yong-Ha

p. 1357 https://doi.org/10.1099/ijs.0.02464-0

Sporosarcina macmurdoensis sp. nov., from a cyanobacterial mat sample from a pond in the McMurdo Dry Valleys, Antarctica

Reddy, G. S. N., Matsumoto, G. I., Shivaji, S.

p. 1363 https://doi.org/10.1099/ijs.0.02628-0

Paenibacillus stellifer sp. nov., a cyclodextrin-producing species isolated from paperboard

Suominen, Irmgard, Sproer, Cathrin, Kampfer, Peter, Rainey, Frederick A., Lounatmaa, Kari, Salkinoja-Salonen, Mirja

p. 1369 https://doi.org/10.1099/ijs.0.02277-0

Caenibacterium thermophilum gen. nov., sp. nov., isolated from a thermophilic aerobic digester of municipal sludge

Manaia, Celia M., Nunes, Olga C., Nogales, Balbina

p. 1375 https://doi.org/10.1099/ijs.0.02622-0

Marinobacter lipolyticus sp. nov., a novel moderate halophile with lipolytic activity

Martin, S., Marquez, M. C., Sanchez-Porro, C., Mellado, E., Arahal, D. R., Ventosa, A.

p. 1383 https://doi.org/10.1099/ijs.0.02528-0

Alkanindiges illinoisensis gen. nov., sp. nov., an obligately hydrocarbonoclastic, aerobic squalane-degrading bacterium isolated from oilfield soils

Bogan, Bill W., Sullivan, Wendy R., Kayser, Kevin J., Derr, KD, Aldrich, Henry C., Paterek, J. Robert

p. 1389 https://doi.org/10.1099/ijs.0.02568-0

Sporomusa aerivorans sp. nov., an oxygen-reducing homoacetogenic bacterium from the gut of a soil-feeding termite

Boga, Hamadi I., Ludwig, Wolfgang, Brune, Andreas

p. 1397 https://doi.org/10.1099/ijs.0.02534-0

Tepidiphilus margaritifer gen. nov., sp. nov., isolated from a thermophilic aerobic digester

Manaia, Celia M., Nogales, Balbina, Nunes, Olga C.

p. 1405 https://doi.org/10.1099/ijs.0.02538-0

Taxonomic study of sucrose-positive Aeromonas jandaei-like isolates from faeces, water and eels: emendation of A. jandaei Carnahan et al. 1992

Esteve, Consuelo, Valera, Lazara, Gutierrez, Carmen, Ventosa, Antonio

p. 1411 https://doi.org/10.1099/ijs.0.02504-0

Streptomonospora alba sp. nov., a novel halophilic actinomycete, and emended description of the genus Streptomonospora Cui et al. 2001

Li, Wen-Jun, Xu, Ping, Zhang, Li-Ping, Tang, Shu-Kun, Cui, Xiao-Long, Mao, Pei-Hong, Xu, Li-Hua, Schumann, Peter et al.

p. 1421 https://doi.org/10.1099/ijs.0.02543-0

Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor

Kim, Kwang Kyu, Lee, Chang Soo, Kroppenstedt, Reiner M., Stackebrandt, Erko, Lee, Sung Taik

p. 1427 https://doi.org/10.1099/ijs.0.02224-0

Agromyces albus sp. nov., isolated from a plant (Androsace sp.)

Dorofeeva, Lubov V., Krausova, Valentina I., Evtushenko, Lyudmila I., Tiedje, James M.

p. 1435 https://doi.org/10.1099/ijs.0.02428-0

Reclassification of Desulfotomaculum auripigmentum as Desulfosporosinus auripigmenti corrig., comb. nov.

Stackebrandt, Erko, Schumann, Peter, Schuler, Esther, Hippe, Hans

p. 1439 https://doi.org/10.1099/ijs.0.02526-0

Actinomyces nasicola sp. nov., isolated from a human nose

Hall, Val, Collins, Matthew D., Lawson, Paul A., Falsen, Enevold, Duerden, Brian I.

p. 1445 https://doi.org/10.1099/ijs.0.02582-0

Proposal of Histophilus somni gen. nov., sp. nov. for the three species incertae sedis 'Haemophilus somnus', 'Haemophilus agni' and 'Histophilus ovis'

Angen, Oystein, Ahrens, Peter, Kuhnert, Peter, Christensen, Henrik, Mutters, Reinier

p. 1449 https://doi.org/10.1099/ijs.0.02637-0

Aquaspirillum dispar Hylemon et al. 1973 and Microvirgula aerodenitrificans Patureau et al. 1998 are subjective synonyms

Cleenwerck, I., De Wachter, M., Hoste, B., Janssens, D., Swings, J.

p. 1457 https://doi.org/10.1099/ijs.0.02675-0

Fluorescent pseudomonads associated with the phyllosphere of grasses; Pseudomonas trivialis sp. nov., Pseudomonas poae sp. nov. and Pseudomonas congelans sp. nov.

Behrendt, Undine, Ulrich, Andreas, Schumann, Peter

p. 1461 https://doi.org/10.1099/ijs.0.02567-0

Shewanella waksmanii sp. nov., isolated from a sipuncula (Phascolosoma japonicum)

Ivanova, Elena P., Nedashkovskaya, Olga I., Zhukova, Natalia V., Nicolau, Dan V., Christen, Richard, Mikhailov, Valery V.

p. 1471 https://doi.org/10.1099/ijs.0.02630-0

Delftia tsuruhatensis sp. nov., a terephthalate-assimilating bacterium isolated from activated sludge

Shigematsu, Toru, Yumihara, Kazuyo, Ueda, Yutaka, Numaguchi, Masaki, Morimura, Shigeru, Kida, Kenji

p. 1479 https://doi.org/10.1099/ijs.0.02285-0

16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads

Purkhold, Ulrike, Wagner, Michael, Timmermann, Gabriele, Pommerening-Roser, Andreas, Koops, Hans-Peter

p. 1485 https://doi.org/10.1099/ijs.0.02638-0

Vibrio fortis sp. nov. and Vibrio hepatarius sp. nov., isolated from aquatic animals and the marine environment

Thompson, F. L., Thompson, C. C., Hoste, B., Vandemeulebroecke, K., Gullian, M., Swings, J.

p. 1495 https://doi.org/10.1099/ijs.0.02658-0

Promicromonospora vindobonensis sp. nov. and Promicromonospora aerolata sp. nov., isolated from the air in the medieval 'Virgilkapelle' in Vienna

Busse, Hans-Jurgen, Zlamala, Christian, Buczolits, Sandra, Lubitz, Werner, Kampfer, Peter, Takeuchi, Mariko

p. 1503 https://doi.org/10.1099/ijs.0.02522-0

Garciella nitratireducens gen. nov., sp. nov., an anaerobic, thermophilic, nitrate- and thiosulfate-reducing bacterium isolated from an oilfield separator in the Gulf of Mexico

Miranda-Tello, Elizabeth, Fardeau, Marie-Laure, Sepulveda, Jose, Fernandez, Luis, Cayol, Jean-Luc, Thomas, Pierre, Ollivier, Bernard

p. 1509 https://doi.org/10.1099/ijs.0.02662-0

Actinomyces oricola sp. nov., from a human dental abscess

Hall, Val, Collins, Matthew D., Hutson, Roger A., Inganas, Elisabeth, Falsen, Enevold, Duerden, Brian I.

p. 1515 https://doi.org/10.1099/ijs.0.02576-0

Taxonomic re-evaluation of whorl-forming Streptomyces (formerly Streptoverticillium) species by using phenotypes, DNA-DNA hybridization and sequences of gyrB, and proposal of Streptomyces luteireticuli (ex Katoh and Arai 1957) corrig., sp. nov., nom. rev.

Hatano, Kazunori, Nishii, Tadashi, Kasai, Hiroaki

p. 1519 https://doi.org/10.1099/ijs.0.02238-0

Bacillus krulwichiae sp. nov., a halotolerant obligate alkaliphile that utilizes benzoate and m-hydroxybenzoate

Yumoto, Isao, Yamaga, Shingo, Sogabe, Yoko, Nodasaka, Yoshinobu, Matsuyama, Hidetoshi, Nakajima, Kenji, Suemori, Akio

p. 1531 https://doi.org/10.1099/ijs.0.02596-0

Alicyclobacillus pomorum sp. nov., a novel thermo-acidophilic, endospore-forming bacterium that does not possess {omega}-alicyclic fatty acids, and emended description of the genus Alicyclobacillus

Goto, Keiichi, Mochida, Kaoru, Asahara, Mika, Suzuki, Masayuki, Kasai, Hiroaki, Yokota, Akira

p. 1537 https://doi.org/10.1099/ijs.0.02546-0

Prauserella halophila sp. nov. and Prauserella alba sp. nov., moderately halophilic actinomycetes from saline soil

Li, Wen-Jun, Xu, Ping, Tang, Shu-Kun, Xu, Li-Hua, Kroppenstedt, Reiner M., Stackebrandt, Erko, Jiang, Cheng-Lin

p. 1545 https://doi.org/10.1099/ijs.0.02611-0

Methanoculleus bourgensis, Methanoculleus olentangyi and Methanoculleus oldenburgensis are subjective synonyms

Asakawa, Susumu, Nagaoka, Kazunari

p. 1551 https://doi.org/10.1099/ijs.0.02508-0

Longispora albida gen. nov., sp. nov., a novel genus of the family Micromonosporaceae

Matsumoto, Atsuko, Takahashi, Yoko, Shinose, Mayumi, Seino, Akio, Iwai, Yuzuru, Omura, Satoshi

p. 1553 https://doi.org/10.1099/ijs.0.02595-0

Aerobic growth of Anoxybacillus pushchinoensis K1T: emended descriptions of A. pushchinoensis and the genus Anoxybacillus

Pikuta, Elena, Cleland, David, Tang, Jane

p. 1561 https://doi.org/10.1099/ijs.0.02643-0

Acinetobacter parvus sp. nov., a small-colony-forming species isolated from human clinical specimens

Nemec, Alexandr, Dijkshoorn, Lenie, Cleenwerck, Ilse, De Baere, Thierry, Janssens, Danielle, van der Reijden, Tanny J. K., Jezek, Petr, Vaneechoutte, Mario

p. 1563 https://doi.org/10.1099/ijs.0.02631-0

Vibrio pacinii sp. nov., from cultured aquatic organisms

Gomez-Gil, B., Thompson, F. L., Thompson, C. C., Swings, J.

p. 1569 https://doi.org/10.1099/ijs.0.02670-0

Proteobacteria

Characterization of rhizobia isolated from legume species within the genera Astragalus and Lespedeza grown in the Loess Plateau of China and description of Rhizobium loessense sp. nov.

Ge Hong Wei, Zhi Yuan Tan, Ming E Zhu, En Tao Wang, Su Zhen Han, Wen Xin Chen

p. 1575–1583 https://doi.org/10.1099/ijs.0.02031-0

Desulfonauticus submarinus gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent

Audiffrin, Carine, Cayol, Jean-Luc, Joulian, Catherine, Casalot, Laurence, Thomas, Pierre, Garcia, Jean-Louis, Ollivier, Bernard

p. 1585 https://doi.org/10.1099/ijs.0.02551-0

Saccharomonospora paurometabolica sp. nov., a moderately halophilic actinomycete isolated from soil in China

Li, Wen-Jun, Tang, Shu-Kun, Stackebrandt, Erko, Kroppenstedt, Reiner M., Schumann, Peter, Xu, Li-Hua, Jiang, Cheng-Lin

p. 1591 https://doi.org/10.1099/ijs.0.02633-0

Nocardia puris sp. nov.

Yassin, A. F., Straubler, B., Schumann, P., Schaal, K. P.

p. 1595 https://doi.org/10.1099/ijs.0.02593-0

Amycolatopsis kentuckyensis sp. nov., Amycolatopsis lexingtonensis sp. nov. and Amycolatopsis pretoriensis sp. nov., isolated from equine placentas

Labeda, D. P., Donahue, J. M., Williams, N. M., Sells, S. F., Henton, M. M.

p. 1601 https://doi.org/10.1099/ijs.0.02691-0

Reclassification of Sulfolobus hakonensis Takayanagi et al. 1996 as Metallosphaera hakonensis comb. nov. based on phylogenetic evidence and DNA G+C content

Kurosawa, Norio, Itoh, Yuko H., Itoh, Takashi

p. 1607 https://doi.org/10.1099/ijs.0.02716-0

Flow cytometric sorting, phylogenetic analysis and in situ detection of Oscillospira guillermondii, a large, morphologically conspicuous but uncultured ruminal bacterium

Yanagita, Kazuhiro, Manome, Akira, Meng, Xian-Ying, Hanada, Satoshi, Kanagawa, Takahiro, Tsuchida, Takayasu, Mackie, Roderick I., Kamagata, Yoichi

p. 1609 https://doi.org/10.1099/ijs.0.02541-0

Reclassification of Vibrio hollisae as Grimontia hollisae gen. nov., comb. nov.

Thompson, Fabiano L., Hoste, Bart, Vandemeulebroecke, Katrien, Swings, Jean

p. 1615 https://doi.org/10.1099/ijs.0.02660-0

Species identification of genus Bifidobacterium based on partial HSP60 gene sequences and proposal of Bifidobacterium thermacidophilum subsp. porcinum subsp. nov.

Zhu, Lin, Li, Wei, Dong, Xiuzhu

p. 1619 https://doi.org/10.1099/ijs.0.02617-0

Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea

Yoon, Jung-Hoon, Kim, In-Gi, Kang, Kook Hee, Oh, Tae-Kwang, Park, Yong-Ha

p. 1625 https://doi.org/10.1099/ijs.0.02536-0

Burkholderia sordidicola sp. nov., isolated from the white-rot fungus Phanerochaete sordida

Lim, Young Woon, Baik, Keun Sik, Han, Suk Kyun, Kim, Seung Bum, Bae, Kyung Sook

p. 1631 https://doi.org/10.1099/ijs.0.02456-0

Deferribacter abyssi sp. nov., an anaerobic thermophile from deep-sea hydrothermal vents of the Mid-Atlantic Ridge

Miroshnichenko, M. L., Slobodkin, A. I., Kostrikina, N. A., L'Haridon, S., Nercessian, O., Spring, S., Stackebrandt, E., Bonch-Osmolovskaya, E. A. et al.

p. 1637 https://doi.org/10.1099/ijs.0.02673-0

Gram-Positive Bacteria