Proteobacteria

Acinetobacter kookii sp. nov., isolated from soil

  • 1Department of Molecular Cell Biology, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon 440-746, Republic of Korea
  • 2Graduate School of Public Health, Seoul National University, Seoul 151-742, Republic of Korea
  • 3Water Environment Research Department, National Institute of Environmental Research, Incheon 404-708, Republic of Korea
  • 4Laboratory of Microbiology & BCCM/LMG Bacteria Collection, Faculty of Sciences, Ghent University, K.L. Ledeganchstraat 35, B-9000 Gent, Belgium
  • 5Institute for Medical Microbiology, Immunology and Hygiene, University of Cologne, Goldenfelsstrasse 19-21, 50935 Köln, Germany
  • 6Department of Infectious Diseases C5-P, Leiden University Medical Center, 2300 RC Leiden, The Netherlands
  • Correspondence
    Kwan Soo Ko ksko{at}skku.edu
  • International Journal of Systematic and Evolutionary Microbiology 2013; 63(Pt 12):4402–4406 · https://doi.org/10.1099/ijs.0.047969-0

    View at publisher PubMed

    Abstract

    Two Gram-stain-negative, non-fermentative bacterial strains, designated 11-0202T and 11-0607, were isolated from soil in South Korea, and four others, LUH 13522, LUH 8638, LUH 10268 and LUH 10288, were isolated from a beet field in Germany, soil in the Netherlands, and sediment of integrated fish farms in Malaysia and Thailand, respectively. Based on 16S rRNA, rpoB and gyrB gene sequences, they are considered to represent a novel species of the genus Acinetobacter. Their 16S rRNA gene sequences showed greatest pairwise similarity to Acinetobacter beijerinckii NIPH 838T (97.9–98.4 %). They shared highest rpoB and gyrB gene sequence similarity with Acinetobacter johnsonii DSM 6963T and Acinetobacter bouvetii 4B02T (85.4–87.6 and 78.1–82.7 %, respectively). Strain 11-0202T displayed low DNA–DNA reassociation values (<40 %) with the most closely related species of the genus Acinetobacter. The six strains utilized azelate, 2,3-butanediol, ethanol and dl-lactate as sole carbon sources. Cellular fatty acid analyses showed similarities to profiles of related species of the genus Acinetobacter: summed feature 3 (C16 : 1ω7c, C16 : 1ω6c; 24.3–27.2 %), C18 : 1ω9c (19.9–22.1 %), C16 : 0 (15.2–22.0 %) and C12 : 0 (9.2–14.2 %). On the basis of the current findings, it is concluded that the six strains represent a novel species, for which the name Acinetobacter kookii sp. nov. is proposed. The type strain is 11-0202T ( = KCTC 32033T = JCM 18512T).

    • The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA, rpoB and gyrB gene sequences of strains 11-0202T and 11-0706 are JX137279, JX137280 and JX844152–JX844155.

    Abbreviations:
    CFA
    cellular fatty acid