Firmicutes And Related Organisms

Natranaerobaculum magadiense gen. nov., sp. nov., an anaerobic, alkalithermophilic bacterium from soda lake sediment

  • 1Institute of Microbiology, Russian Academy of Sciences, Prospect 60-letiya Oktyabrya 7/2, 117312 Moscow, Russia
  • 2Center ‘Bioengineering’, Russian Academy of Sciences, Prospect 60-letiya Oktyabrya 7/1, 117312 Moscow, Russia
  • 3Bakulev Center of Cardiovascular Surgery, Russian Academy of Medical Sciences, Rublevskoe shosse, Moscow 135, Russia
  • 4Gubkin Russian State University of Oil and Gas, Leninskii Prospect 65, 119991 Moscow, Russia
  • Correspondence
    Daria G. Zavarzina zavarzinatwo{at}mail.ru
  • International Journal of Systematic and Evolutionary Microbiology 2013; 63(Pt 12):4456–4461 · https://doi.org/10.1099/ijs.0.054536-0

    View at publisher PubMed

    Abstract

    An obligately alkaliphilic, anaerobic, thermo- and halotolerant, spore-forming bacterium was isolated from sediments of soda lake Magadi (Kenya) and designated strain Z-1001T. Cells of strain Z-1001T were straight, Gram-positive rods, slowly motile. Strain Z-1001T was found to be an obligate anaerobe. It grew within a pH range from 7.5 to 10.7 with an optimum at 9.25–9.5 (at 40 °C), a temperature range from 20 to 57 °C with an optimum at 45–50 °C, and a NaCl concentration range from 0 to 1.55 M with an optimum at 1.2–1.4 M. Peptides, such as meat and yeast extracts, peptone and tryptone, were fermented by Z-1001T. Carbohydrates did not support growth. With yeast extract as an electron donor, strain Z-1001T reduced , , , Fe(III) citrate and anthraquinone-2,6-disulfonate (AQDS) as electron acceptors. The isolate was able to grow oligotrophically with a very small amount of yeast extract: 0.03 g l−1. The main fatty acids were C16 : 0, C16 : 1ω7c, C18 : 0 and C18 : 1ω9. The DNA G+C content of the isolate was 35.6 mol%. 16S rRNA gene sequence analysis showed that strain Z-1001T is a member of family Natranaerobiaceae, clustering with the type strain of Natranaerobius thermophilus (95.8–96.0 % sequence similarity). On the basis of physiological and phylogenetic data it is proposed that strain Z-1001T ( = DSM 24923T = VKM B-2666T) represents a novel genus and species, Natranaerobaculum magadiense gen. nov., sp. nov.

    • The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences reported in this paper are HQ322118HQ322120.

    • Five supplementary figures are available with the online version of this paper.

    Abbreviations:
    AQDS
    anthraquinone-2,6-disulfonate