Issue table of contents

International Journal of Systematic and Evolutionary Microbiology — Volume 53, Issue 1

55 articles in this issue

Validation of publication of new names and new combinations previously effectively published outside the IJSEM

p. 1 https://doi.org/10.1099/ijs.0.02651-0

Notification that new names and new combinations have appeared in volume 52, part 5, of the IJSEM

p. 3 https://doi.org/10.1099/ijs.0.02652-0

Molecular analysis of sourdough reveals Lactobacillus mindensis sp. nov.

Ehrmann, Matthias A., Muller, Martin R. A., Vogel, Rudi F.

p. 7 https://doi.org/10.1099/ijs.0.02202-0

Bosea eneae sp. nov., Bosea massiliensis sp. nov. and Bosea vestrisii sp. nov., isolated from hospital water supplies, and emendation of the genus Bosea (Das et al. 1996)

La Scola, Bernard, Mallet, Marie-Noelle, Grimont, Patrick A. D., Raoult, Didier

p. 15 https://doi.org/10.1099/ijs.0.02127-0

Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea

Kwon, Soon Wo, Kim, Jong Shik, Park, In Cheol, Yoon, Sang Hong, Park, Duck Hwan, Lim, Chun Keun, Go, Seung Joo

p. 21 https://doi.org/10.1099/ijs.0.02326-0

Nocardiacerradoensis sp. nov., a novel isolate from Cerrado soil in Brazil

Albuquerque de Barros, Erika V. S., Manfio, Gilson P., Ribeiro Maitan, Valeria, Mendes Bataus, Luiz A., Kim, Seung Bum, Maldonado, Luis A., Goodfellow, Michael

p. 29 https://doi.org/10.1099/ijs.0.02020-0

Porphyrobacter cryptus sp. nov., a novel slightly thermophilic, aerobic, bacteriochlorophyll a-containing species

Rainey, Fred A., Silva, Joana, Nobre, M. Fernanda, Silva, Manuel T., da Costa, Milton S.

p. 35 https://doi.org/10.1099/ijs.0.02308-0

Corynebacterium spheniscorum sp. nov., isolated from the cloacae of wild penguins

Goyache, J., Vela, A. I., Collins, M. D., Ballesteros, C., Briones, V., Moreno, J., Yorio, P., Dominguez, L. et al.

p. 43 https://doi.org/10.1099/ijs.0.02343-0

Novosphingobium tardaugens sp. nov., an oestradiol-degrading bacterium isolated from activated sludge of a sewage treatment plant in Tokyo

Fujii, Katsuhiko, Satomi, Masataka, Morita, Naoki, Motomura, Taizo, Tanaka, Tadaharu, Kikuchi, Shintaro

p. 47 https://doi.org/10.1099/ijs.0.02301-0

Microbulbifersalipaludis sp. nov., a moderate halophile isolated from a Korean salt marsh

Yoon, Jung-Hoon, Kim, In-Gi, Shin, Dong-Yeon, Kang, Kook Hee, Park, Yong-Ha

p. 53 https://doi.org/10.1099/ijs.0.02342-0

Marinithermus hydrothermalis gen. nov., sp. nov., a strictly aerobic, thermophilic bacterium from a deep-sea hydrothermal vent chimney

Sako, Yoshihiko, Nakagawa, Satoshi, Takai, Ken, Horikoshi, Koki

p. 59 https://doi.org/10.1099/ijs.0.02364-0

EVOLUTION, PHYLOGENY AND BIODIVERSITY

Significant differences between Lactobacillus casei subsp. casei ATCC 393T and a commonly used plasmid-cured derivative revealed by a polyphasic study

Evelia Acedo-Félix, Gaspar Pérez-Martínez

p. 67–75 https://doi.org/10.1099/ijs.0.02325-0

Legionella busanensis sp. nov., isolated from cooling tower water in Korea

Park, Mi-Yeoun, Ko, Kwan Soo, Lee, Hae Kyung, Park, Man-Suk, Kook, Yoon-Hoh

p. 77 https://doi.org/10.1099/ijs.0.02268-0

Reichenbachia agariperforans gen. nov., sp. nov., a novel marine bacterium in the phylum Cytophaga-Flavobacterium-Bacteroides

Nedashkovskaya, Olga I., Suzuki, Makoto, Vysotskii, Mikhail V., Mikhailov, Valery V.

p. 81 https://doi.org/10.1099/ijs.0.02128-0

Phylogenetic study of Staphylococcus and Macrococcus species based on partial hsp60 gene sequences

Kwok, Anita Y. C., Chow, Anthony W.

p. 87 https://doi.org/10.1099/ijs.0.02210-0

Chryseobacterium defluvii sp. nov., isolated from wastewater

Kampfer, Peter, Dreyer, Ute, Neef, Alexander, Dott, Wolfgang, Busse, Hans-Jurgen

p. 93 https://doi.org/10.1099/ijs.0.02073-0

Xylanimonas cellulosilytica gen. nov., sp. nov., a xylanolytic bacterium isolated from a decayed tree (Ulmus nigra)

Rivas, Raul, Sanchez, Manuel, Trujillo, Martha E., Zurdo-Pineiro, Jose Luis, Mateos, Pedro F., Martinez-Molina, Eustoquis, Velazquez, Encarna

p. 99 https://doi.org/10.1099/ijs.0.02207-0

Detection and characterization of Pasteuria 16S rRNA gene sequences from nematodes and soils

Duan, Y. P., Castro, H. F., Hewlett, T. E., White, J. H., Ogram, A. V.

p. 105 https://doi.org/10.1099/ijs.0.02303-0

Phylogenetic heterogeneity of the species Acidithiobacillus ferrooxidans

Karavaiko, Grigorii I., Turova, Tat'yana P., Kondrat'eva, Tamara F., Lysenko, Anatoli M., Kolganova, Tat'yana V., Ageeva, Svetlana N., Muntyan, Lyudmila N., Pivovarova, Tat'yana A.

p. 113 https://doi.org/10.1099/ijs.0.02319-0

'Candidatus Glomeribacter gigasporarum' gen. nov., sp. nov., an endosymbiont of arbuscular mycorrhizal fungi

Bianciotto, Valeria, Lumini, Erica, Bonfante, Paola, Vandamme, Peter

p. 121 https://doi.org/10.1099/ijs.0.02382-0

Pseudoalteromonas agarivorans sp. nov., a novel marine agarolytic bacterium

Romanenko, Lyudmila A., Zhukova, Natalia V., Rohde, Manfred, Lysenko, Anatoly M., Mikhailov, Valery V., Stackebrandt, Erko

p. 125 https://doi.org/10.1099/ijs.0.02234-0

Lactobacillus ingluviei sp. nov., isolated from the intestinal tract of pigeons

Baele, Margo, Vancanneyt, Marc, Devriese, Luc A., Lefebvre, Karen, Swings, Jean, Haesebrouck, Freddy

p. 133 https://doi.org/10.1099/ijs.0.02206-0

Actinomadura catellatispora sp. nov. and Actinomadura glauciflava sp. nov., from a sewage ditch and soil in southern China

Lu, Zhitang, Wang, Liming, Zhang, Yamei, Shi, Yanlin, Liu, Zhiheng, Quintana, Erika T., Goodfellow, Michael

p. 137 https://doi.org/10.1099/ijs.0.02243-0

Emended description of Streptococcus ferus isolated from pigs and rats

Baele, Margo, Devriese, Luc A., Vancanneyt, Marc, Vaneechoutte, Mario, Snauwaert, Cindy, Swings, Jean, Haesebrouck, Freddy

p. 143 https://doi.org/10.1099/ijs.0.02246-0

Proteobacteria

Alicycliphilus denitrificans gen. nov., sp. nov., a cyclohexanol-degrading, nitrate-reducing β-proteobacterium

Tahar Mechichi, Erko Stackebrandt, Georg Fuchs

p. 147–152 https://doi.org/10.1099/ijs.0.02276-0

Isolation and characterization of spirilloid purple phototrophic bacteria forming red layers in microbial mats of Mediterranean salterns: description of Halorhodospira neutriphila sp. nov. and emendation of the genus Halorhodospira

Hirschler-Rea, Agnes, Matheron, Robert, Riffaud, Christine, Moune, Sophie, Eatock, Claire, Herbert, Rodney A., Willison, John C., Caumette, Pierre

p. 153 https://doi.org/10.1099/ijs.0.02226-0

Bacillus nealsonii sp. nov., isolated from a spacecraft-assembly facility, whose spores are {gamma}-radiation resistant

Venkateswaran, Kasthuri, Kempf, Michael, Chen, Fei, Satomi, Masataka, Nicholson, Wayne, Kern, Roger

p. 165 https://doi.org/10.1099/ijs.0.02311-0

Desulfovibrio hydrothermalis sp. nov., a novel sulfate-reducing bacterium isolated from hydrothermal vents

Alazard, D., Dukan, S., Urios, A., Verhe, F., Bouabida, N., Morel, F., Thomas, P., Garcia, J.-L. et al.

p. 173 https://doi.org/10.1099/ijs.0.02323-0

Reclassification of 'Blastobacter viscosus' 7d and 'Blastobacter aminooxidans' 14a as Xanthobacter viscosus sp. nov. and Xanthobacter aminoxidans sp. nov.

Doronina, Nina V., Trotsenko, Yuri A.

p. 179 https://doi.org/10.1099/ijs.0.02231-0

Kocuria polaris sp. nov., an orange-pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample

Reddy, Gundlapally S. N., Prakash, Jogadhenu S. S., Prabahar, Vadivel, Matsumoto, Genki I., Stackebrandt, Erko, Shivaji, Sisinthy

p. 183 https://doi.org/10.1099/ijs.0.02336-0

Plesiocystis pacifica gen. nov., sp. nov., a marine myxobacterium that contains dihydrogenated menaquinone, isolated from the Pacific coasts of Japan

Iizuka, Takashi, Jojima, Yasuko, Fudou, Ryosuke, Hiraishi, Akira, Ahn, Jong-Woong, Yamanaka, Shigeru

p. 189 https://doi.org/10.1099/ijs.0.02418-0

Gram-Positive Bacteria

‘Candidatus Pasteuria usgae’ sp. nov., an obligate endoparasite of the phytoparasitic nematode Belonolaimus longicaudatus

R. M. Giblin-Davis, D. S. Williams, S. Bekal, D. W. Dickson, J. A. Brito, J. O. Becker, J. F. Preston

p. 197–200 https://doi.org/10.1099/ijs.0.02292-0

Butyrivibrio hungatei sp. nov. and Pseudobutyrivibrio xylanivorans sp. nov., butyrate-producing bacteria from the rumen

Kopecny, Jan, Zorec, Masa, Mrazek, Jakub, Kobayashi, Yasuo, Marinsek-Logar, Romana

p. 201 https://doi.org/10.1099/ijs.0.02345-0

Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces

Zoetendal, Erwin G., Plugge, Caroline M., Akkermans, Antoon D. L., de Vos, Willem M.

p. 211 https://doi.org/10.1099/ijs.0.02362-0

Streptomyces yunnanensis sp. nov., a mesophile from soils in Yunnan, China

Zhang, Qi, Li, Wen-Jun, Cui, Xiao-Long, Li, Ming-Gang, Xu, Li-Hua, Jiang, Cheng-Lin

p. 217 https://doi.org/10.1099/ijs.0.01851-0

Methylophaga alcalica sp. nov., a novel alkaliphilic and moderately halophilic, obligately methylotrophic bacterium from an East Mongolian saline soda lake

Doronina, Nina V., Darmaeva, Tsyregma D., Trotsenko, Yuri A.

p. 223 https://doi.org/10.1099/ijs.0.02267-0

Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium

Berry, Alan, Janssens, Danielle, Humbelin, Markus, Jore, Jan P. M., Hoste, Bart, Cleenwerck, Ilse, Vancanneyt, Marc, Bretzel, Werner et al.

p. 231 https://doi.org/10.1099/ijs.0.02368-0

Vibrio rotiferianus sp. nov., isolated from cultures of the rotifer Brachionus plicatilis

Gomez-Gil, B., Thompson, F. L., Thompson, C. C., Swings, J.

p. 239 https://doi.org/10.1099/ijs.0.02430-0

Vibrio neptunius sp. nov., Vibrio brasiliensis sp. nov. and Vibrio xuii sp. nov., isolated from the marine aquaculture environment (bivalves, fish, rotifers and shrimps)

Thompson, F. L., Li, Y., Gomez-Gil, B., Thompson, C. C., Hoste, B., Vandemeulebroecke, K., Rupp, G. S., Pereira, A. et al.

p. 245 https://doi.org/10.1099/ijs.0.02447-0

Spore-forming Serratia marcescens subsp. sakuensis subsp. nov., isolated from a domestic wastewater treatment tank

Ajithkumar, Bindu, Ajithkumar, Vasudevan P., Iriye, Ryozo, Doi, Yukio, Sakai, Tadashi

p. 253 https://doi.org/10.1099/ijs.0.02158-0

Clostridium colicanis sp. nov., from canine faeces

Greetham, Hazel L., Gibson, Glenn R., Giffard, Catriona, Hippe, Hans, Merkhoffer, Birgit, Steiner, Ulrike, Falsen, Enevold, Collins, Matthew D.

p. 259 https://doi.org/10.1099/ijs.0.02260-0

Lactobacillus thermotolerans sp. nov., a novel thermotolerant species isolated from chicken faeces

Niamsup, Piyanuch, Sujaya, I Nengah, Tanaka, Michiko, Sone, Teruo, Hanada, Satoshi, Kamagata, Yoichi, Lumyong, Saisamorn, Assavanig, Apinya et al.

p. 263 https://doi.org/10.1099/ijs.0.02347-0

Streptomyces mexicanus sp. nov., a xylanolytic micro-organism isolated from soil

Petrosyan, Pavel, Garcia-Varela, Martin, Luz-Madrigal, Agustin, Huitron, Carlos, Flores, Maria Elena

p. 269 https://doi.org/10.1099/ijs.0.02251-0

Genetic relationships among avian isolates classified as Pasteurella haemolytica, 'Actinobacillus salpingitidis' or Pasteurella anatis with proposal of Gallibacterium anatis gen. nov., comb. nov. and description of additional genomospecies within Gallibacterium gen. nov.

Christensen, Henrik, Bisgaard, Magne, Bojesen, Anders Miki, Mutters, Reinier, Olsen, John Elmerdahl

p. 275 https://doi.org/10.1099/ijs.0.02330-0

Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases

Hugenholtz, Philip, Huber, Thomas

p. 289 https://doi.org/10.1099/ijs.0.02441-0

Paenibacillus kribbensis sp. nov. and Paenibacillus terrae sp. nov., bioflocculants for efficient harvesting of algal cells

Yoon, Jung-Hoon, Oh, Hee-Mock, Yoon, Byung-Dae, Kang, Kook Hee, Park, Yong-Ha

p. 295 https://doi.org/10.1099/ijs.0.02108-0

Agromyces aurantiacus sp. nov., isolated from a Chinese primeval forest

Li, Wen-Jun, Zhang, Li-Ping, Xu, Ping, Cui, Xiao-Long, Xu, Li-Hua, Zhang, Zhongse, Schumann, Peter, Stackebrandt, Erko et al.

p. 303 https://doi.org/10.1099/ijs.0.02350-0

Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis

Ben-Haim, Y., Thompson, F. L., Thompson, C. C., Cnockaert, M. C., Hoste, B., Swings, J., Rosenberg, E.

p. 309 https://doi.org/10.1099/ijs.0.02402-0

Nocardiopsis xinjiangensis sp. nov., a halophilic actinomycete isolated from a saline soil sample in China

Li, Ming-Gang, Li, Wen-Jun, Xu, Ping, Cui, Xiao-Long, Xu, Li-Hua, Jiang, Cheng-Lin

p. 317 https://doi.org/10.1099/ijs.0.02055-0

Other Bacteria

Caldithrix abyssi gen. nov., sp. nov., a nitrate-reducing, thermophilic, anaerobic bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent, represents a novel bacterial lineage

Margarita L. Miroshnichenko, Nadezhda A. Kostrikina, Nikolai A. Chernyh, Nikolai V Pimenov, Tatyana P. Tourova, Alexei N. Antipov, Stefan Spring, Erko Stackebrandt et al.

p. 323–329 https://doi.org/10.1099/ijs.0.02390-0

Description of Alcanivorax venustensis sp. nov. and reclassification of Fundibacter jadensis DSM 12178T (Bruns and Berthe-Corti 1999) as Alcanivorax jadensis comb. nov., members of the emended genus Alcanivorax

Fernandez-Martinez, Javier, Pujalte, Maria J., Garcia-Martinez, Jesus, Mata, Manuel, Garay, Esperanza, Rodriguez-Valera, Francisco

p. 331 https://doi.org/10.1099/ijs.0.01923-0

Starmerella meliponinorum sp. nov., a novel ascomycetous yeast species associated with stingless bees

Teixeira, Ana C. P., Marini, Marjorie M., Nicoli, Jacques R., Antonini, Yasmine, Martins, Rogerio P., Lachance, Marc-Andre, Rosa, Carlos A.

p. 339 https://doi.org/10.1099/ijs.0.02262-0

EVOLUTION, PHYLOGENY AND BIODIVERSITY

Phylogeny of gregarines (Apicomplexa) as inferred from small-subunit rDNA and β-tubulin

Brian S. Leander, Richard E. Clopton, Patrick J. Keeling

p. 345–354 https://doi.org/10.1099/ijs.0.02284-0

Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage

Saldarriaga, Juan F., McEwan, Michelle L., Fast, Naomi M., Taylor, F. J. R., Keeling, Patrick J.

p. 355 https://doi.org/10.1099/ijs.0.02328-0

Candida kunwiensis sp. nov., a yeast associated with flowers and bumblebees

Hong, Soon Gyu, Bae, Kyung Sook, Herzberg, Michel, Titze, Andreas, Lachance, Marc-Andre

p. 367 https://doi.org/10.1099/ijs.0.02200-0