Bacteroidetes

Reclassification of Xylanibacter oryzae Ueki et al. 2006 as Prevotella oryzae comb. nov., with an emended description of the genus Prevotella

  • Microbe Division/Japan Collection of Microorganisms, RIKEN BioResource Center, Wako, Saitama 351-0198, Japan
  • Correspondence
    Mitsuo Sakamoto sakamoto{at}jcm.riken.jp
  • International Journal of Systematic and Evolutionary Microbiology 2012; 62(Pt 11):2637–2642 · https://doi.org/10.1099/ijs.0.038638-0

    View at publisher PubMed

    Abstract

    16S rRNA gene sequence information has indicated that Xylanibacter oryzae has a close relationship with the genus Prevotella. To clarify the taxonomic position of X. oryzae, we determined the sequence of hsp60 as it represents an alternative phylogenetic marker for identification and classification of Gram-negative anaerobic rods. On the basis of hsp60 sequences, X. oryzae was located within the genus Prevotella, indicating that the species does not represent a distinct taxon at the genus level. Statistical tests (the Shimodaira–Hasegawa test and the approximately unbiased test) supported the finding that X. oryzae is monophyletic with members of the genus Prevotella and thus belongs to the genus. On the basis of the phylogenetic findings, we propose that X. oryzae should be reclassified as Prevotella oryzae comb. nov.; the type strain is KB3T ( = JCM 13648T  = DSM 17970T). An emended description of the genus Prevotella is also provided.

    • The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of Prevotella oryzae comb. nov. JCM 13648T and JCM 13649 are AB588018 and AB588019 and for the hsp60 sequences are AB675483 and AB675484, respectively.