Firmicutes And Related Organisms

Lactobacillus delbrueckii subsp. sunkii subsp. nov., isolated from sunki, a traditional Japanese pickle

  • Yakult Central Institute for Microbiological Research, 1796 Yaho, Kunitachi, Tokyo 186-8650, Japan
  • Correspondence
    Koichi Watanabe koichi-watanabe{at}yakult.co.jp
  • International Journal of Systematic and Evolutionary Microbiology 2012; 62(Pt 11):2643–2649 · https://doi.org/10.1099/ijs.0.037051-0

    View at publisher PubMed

    Abstract

    Although four strains of bacteria isolated from sunki, a traditional Japanese, non-salted pickle, were initially identified as Lactobacillus delbrueckii, the molecular and phenotypic characteristics of the strains did not match those of any of the four recognized subspecies of L. delbrueckii. Together, the results of phenotypic characterization, DNA–DNA hybridizations (in which the relatedness values between the novel strains and type strains of the recognized subspecies of L. delbrueckii were all >88.7 %) and 16S rRNA gene sequence, amplified fragment length polymorphism (AFLP) and whole-cell MALDI-TOF/MS spectral pattern analyses indicated that the four novel strains represented a single, novel subspecies, for which the name Lactobacillus delbrueckii subsp. sunkii subsp. nov. is proposed. The type strain is YIT 11221T ( = JCM 17838T  = DSM 24966T).

    • The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains YIT 11211T, YIT 11220, YIT 11446 and YIT 11673 are AB641833, AB641832, AB641834 and AB641835, respectively.

    • Two supplementary tables and a supplementary figure are available with the online version of this paper.

    Abbreviations:
    AFLP
    amplified fragment length polymorphism
    LAB
    lactic acid bacteria
    MALDI-TOF/MS
    matrix-assisted laser desorption/ionization time-of-flight mass spectrometry