Actinobacteria

Gordonia caeni sp. nov., isolated from sludge of a sewage disposal plant

  • 1Department of Bio & Environmental Technology, Division of Environmental & Life Science, College of Natural Science, Seoul Women’s University, 623 Hwarangno, Nowon-gu, Seoul 139-774, Republic of Korea
  • 2Research and Development Division, H-Plus Eco Ltd, BVC no. 301, KRIBB, Eoeun-dong, Yuseong-gu, Daejeon, 305-333, Republic of Korea
  • 3Daewoo Institute of Construction Technology, 60 Songjuk-dong, Jangan-gu, Suwon-si, Gyeonggi-do 440-210, Republic of Korea
  • 4Korea Testing Certification, Chemical Industry Team, 587-10, Sinsa-Dong, Gangnam-Gu, Seoul, Republic of Korea
  • Correspondence
    Myungjin Lee mgeneli{at}nate.com
  • International Journal of Systematic and Evolutionary Microbiology 2012; 62(Pt 11):2703–2709 · https://doi.org/10.1099/ijs.0.029736-0

    View at publisher PubMed

    Abstract

    A Gram-stain-positive, strictly aerobic, short-rod-shaped, non-motile strain (designated MJ32T) was isolated from a sludge sample of the Daejeon sewage disposal plant in South Korea. A polyphasic approach was applied to study the taxonomic position of strain MJ32T. Strain MJ32T showed highest 16S rRNA gene sequence similarity to Gordonia hirsuta DSM 44140T (98.1 %) and Gordonia hydrophobica DSM 44015T (97.0 %); levels of sequence similarity to the type strains of other recognized Gordonia species were less than 97.0 %. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain MJ32T belonged to the clade formed by members of the genus Gordonia in the family Gordoniaceae. The G+C content of the genomic DNA of strain MJ32T was 69.2 mol%. Chemotaxonomically, strain MJ32T showed features typical of the genus Gordonia. The predominant respiratory quinone was MK-9(H2), the mycolic acids present had C56–C60 carbon atoms, and the major fatty acids were C16 : 0 (34.6 %), tuberculostearic acid (21.8 %), C16 : 1ω7c (19.5 %) and C18 : 1ω9c (12.7 %). The peptidoglycan type was based on meso-2,6-diaminopimelic acid as the diagnostic diamino acid with glycolated sugars. On the basis of phylogenetic inference, fatty acid profile and other phenotypic properties, strain MJ32T is considered to represent a novel species of the genus Gordonia, for which the name Gordonia caeni sp. nov. is proposed. The type strain is MJ32T ( = KCTC 19771T = JCM 16923T).

    • The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain MJ32T is JF806526.

    • A supplementary table and four supplementary figures are available with the online version of this paper.