SGM Journals

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Microbial genomics research

Research using genome sequencing, comparative genomics, metagenomics and genomic epidemiology to understand microbial biology and evolution.

About microbial genomics

Research using genome sequencing, comparative genomics, metagenomics and genomic epidemiology to understand microbial biology and evolution.

This collection brings together 263 matching articles from the Society for General Microbiology archive.

Microbiology: 139 articles
Journal of General Virology: 88 articles
Journal of Medical Microbiology: 18 articles
International Journal of Systematic and Evolutionary Microbiology: 18 articles

Research areas in this collection

Whole-genome sequencing
Comparative and population genomics
Metagenomics and microbial communities
Genomic epidemiology

Microbial genomics articles

Showing records 1–60 of 263, ordered using archive prominence and publication metadata.

Chlamydia trachomatis clinical isolates identified as tetracycline resistant do not exhibit resistance in vitro: whole-genome sequencing reveals a mutation in porB but no evidence for tetracycline resistance genes

C. E. O’Neill, H. M. B. Seth-Smith, B. Van Der Pol, S. R. Harris, N. R. Thomson, L. T. Cutcliffe, et al.

Microbiology2013

Campylobacter sequence typing databases: applications and future prospects

F. M. Colles, M. C. J. Maiden

Microbiology2012

Identification and genomic characterization of a novel fish reovirus, Hubei grass carp disease reovirus, isolated in 2009 in China

Yuding Fan, Shujing Rao, Lingbing Zeng, Jie Ma, Yong Zhou, Jin Xu, et al.

Journal of General Virology2013

Fungal physiology – a future perspective

Richard A. Wilson, Nicholas J. Talbot

Microbiology2009

Isolation and characterization of the first American bottlenose dolphin papillomavirus: Tursiops truncatus papillomavirus type 2

Rehtanz, Manuela, Ghim, Shin-je, Rector, Annabel, Van Ranst, Marc, Fair, Patricia A., Bossart, Gregory D., et al.

Journal of General Virology2006

Amplified fragment length polymorphism based identification of genetic markers and novel PCR assay for differentiation of Campylobacter fetus subspecies

van Bergen, Marcel AP, Simons, Guus, van der Graaf-van Bloois, Linda, van Putten, Jos PM, Rombout, Jeroen, Wesley, Irene, et al.

Journal of Medical Microbiology2005

Yunnan orbivirus, a new orbivirus species isolated from Culex tritaeniorhynchus mosquitoes in China

Attoui, Houssam, Jaafar, Fauziah Mohd, Belhouchet, Mourad, Aldrovandi, Nicolas, Tao, Sanju, Chen, Boquan, et al.

Journal of General Virology2005

Variability of a glucose phosphotransferase system permease in Mycoplasma mycoides subsp. mycoides Small Colony

Gaurivaud, Patrice, Persson, Anja, Grand, Dominique Le, Westberg, Joakim, Solsona, Michel, Johansson, Karl-Erik, et al.

Microbiology2004

Extracting phylogenetic information from whole-genome sequencing projects: the lactic acid bacteria as a test case

Coenye, Tom, Vandamme, Peter

Microbiology2003

Molecular epidemiology of dengue type 2 virus in Venezuela: evidence for in situ virus evolution and recombination

Uzcategui, N. Y., Camacho, D., Comach, G., Cuello de Uzcategui, R., Holmes, E. C., Gould, E. A.

Journal of General Virology2001

Genomic survey of cAMP and cGMP signalling components in the cyanobacterium Synechocystis PCC 6803

Ochoa de Alda, Jesus A. G., Houmard, Jean

Microbiology2000

Absence in Helicobacter pylori of an uptake sequence for enhancing uptake of homospecific DNA during transformation

Saunders, Nigel J., Peden, John F., Moxon, E. Richard

Microbiology1999

The genome sequence of the virulent Kabete 'O' strain of rinderpest virus: comparison with the derived vaccine

Baron, Michael D., Kamata, Yasue, Barras, Valerie, Goatley, Lynnette, Barrett, Thomas

Journal of General Virology1996

Genome drafts of four phytoplasma strains of the ribosomal group 16SrIII

Federica Saccardo, Marta Martini, Sabrina Palmano, Paolo Ermacora, Marco Scortichini, Nazia Loi, et al.

Microbiology2012

Novel approaches for analysing gut microbes and dietary polyphenols: challenges and opportunities

R. A. Kemperman, S. Bolca, L. C. Roger, E. E. Vaughan

Microbiology2010

Comparative genomics of the genus Bifidobacterium

Francesca Bottacini, Duccio Medini, Angelo Pavesi, Francesca Turroni, Elena Foroni, David Riley, et al.

Microbiology2010

Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis

Patrick, Sheila, Blakely, Garry W., Houston, Simon, Moore, Jane, Abratt, Valerie R., Bertalan, Marcelo, et al.

Microbiology2010

Functional and phenotypic characterization of a protein from Lactobacillus acidophilus involved in cell morphology, stress tolerance and adherence to intestinal cells

Sarah J. O'Flaherty, Todd R. Klaenhammer

Microbiology2010

Metagenomic sequencing for virus identification in a public-health setting

Svraka, Sanela, Rosario, Karyna, Duizer, Erwin, van der Avoort, Harrie, Breitbart, Mya, Koopmans, Marion

Journal of General Virology2010

Streptomyces atriruber sp. nov. and Streptomyces silaceus sp. nov., two novel species of equine origin

Labeda, D. P., Price, N. P., Kroppenstedt, R. M., Donahue, J. M., Williams, N. M., Sells, S. F.

International Journal of Systematic and Evolutionary Microbiology2009

Gene cloning and characteristics of the RND-type multidrug efflux pump MuxABC-OpmB possessing two RND components in Pseudomonas aeruginosa

Mima, Takehiko, Kohira, Naoki, Li, Yang, Sekiya, Hiroshi, Ogawa, Wakano, Kuroda, Teruo, et al.

Microbiology2009

A model of efficiency: stress tolerance by Streptococcus mutans

Lemos, Jose A., Burne, Robert A.

Microbiology2008

Genomic sequence and biological characterization of a nucleopolyhedrovirus isolated from the summer fruit tortrix, Adoxophyes orana

Hilton, Sally, Winstanley, Doreen

Journal of General Virology2008

Nickel enzyme maturation in Helicobacter hepaticus: roles of accessory proteins in hydrogenase and urease activities

Benoit, Stephane L., Zbell, Andrea L., Maier, Robert J.

Microbiology2007

Diversity of the genus Lactobacillus revealed by comparative genomics of five species

Canchaya, Carlos, Claesson, Marcus J., Fitzgerald, Gerald F., van Sinderen, Douwe, O'Toole, Paul W.

Microbiology2006

Genome-enabled analysis of the utilization of taurine as sole source of carbon or of nitrogen by Rhodobacter sphaeroides 2.4.1

Denger, Karin, Smits, Theo H. M., Cook, Alasdair M.

Microbiology2006

Full-length genome sequences of two SARS-like coronaviruses in horseshoe bats and genetic variation analysis

Ren, Wuze, Li, Wendong, Yu, Meng, Hao, Pei, Zhang, Yuan, Zhou, Peng, et al.

Journal of General Virology2006

Complete coding sequences of the rabbitpox virus genome

Li, G., Chen, N., Roper, R. L., Feng, Z., Hunter, A., Danila, M., et al.

Journal of General Virology2005

Distribution of espI among clinical enterohaemorrhagic and enteropathogenic Escherichia coli isolates

Mundy, Rosanna, Jenkins, Claire, Yu, Jun, Smith, Henry, Frankel, Gad

Journal of Medical Microbiology2004

An unusual integron in Treponema denticola

Coleman, Nick, Tetu, Sasha, Wilson, Neil, Holmes, Andrew

Microbiology2004

Identification and analysis of a siderophore biosynthetic gene cluster from Agrobacterium tumefaciens C58

Rondon, Michelle R., Ballering, Katie S., Thomas, Michael G.

Microbiology2004

Development of a reverse-genetics system for Avian pneumovirus demonstrates that the small hydrophobic (SH) and attachment (G) genes are not essential for virus viability

Naylor, Clive J., Brown, Paul A., Edworthy, Nicole, Ling, Roger, Jones, Richard C., Savage, Carol E., et al.

Journal of General Virology2004

Complete genome sequence of Mycoreovirus-1/Cp9B21, a member of a novel genus within the family Reoviridae, isolated from the chestnut blight fungus Cryphonectria parasitica

Suzuki, Nobuhiro, Supyani, S., Maruyama, Kazuyuki, Hillman, Bradley I.

Journal of General Virology2004

What does a bacterial genome sequence represent? Mis-assignment of MAFF 303099 to the genospecies Mesorhizobium loti

Turner, Sarah L., Zhang, Xue-Xian, Li, Fu-Di, Young, J. Peter W.

Microbiology2002

Periplasmic maltose- and glucose-binding protein activities in cell-free extracts of Thermotoga maritima

Nanavati, Dhaval, Noll, Kenneth M., Romano, Antonio H.

Microbiology2002

Six GTP-binding proteins of the Era/Obg family are essential for cell growth in Bacillus subtilis

Morimoto, Takuya, Loh, Pek Chin, Hirai, Tomohiro, Asai, Kei, Kobayashi, Kazuo, Moriya, Shigeki, et al.

Microbiology2002

A new regulatory DNA motif of the gamma subclass Proteobacteria: identification of the LexA protein binding site of the plant pathogen Xylella fastidiosa

Campoy, Susana, Mazon, Gerard, Fernandez de Henestrosa, Antonio R., Llagostera, Montserrat, Monteiro, Patricia Brant, Barbe, Jordi

Microbiology2002

Genome organization of the densovirus from Bombyx mori (BmDNV-1) and enzyme activity of its capsid

Li, Y., Zadori, Z., Bando, H., Dubuc, R., Fediere, G., Szelei, J., et al.

Journal of General Virology2001

Closing in on Chlamydia and its intracellular bag of tricks

Patrik M. Bavoil, Ru-ching Hsia, David M. Ojcius

Microbiology2000

Stress responses of Synechocystis sp. strain PCC 6803 mutants impaired in genes encoding putative alternative sigma factors

Huckauf, Jana, Nomura, Chris, Forchhammer, Karl, Hagemann, Martin

Microbiology2000

Completion of the Tula hantavirus genome sequence: properties of the L segment and heterogeneity found in the 3' termini of S and L genome RNAs

Kukkonen, SK, Vaheri, A, Plyusnin, A

Journal of General Virology1998

Mycobacterium abscessus infection in cystic fibrosis: molecular typing and clinical outcomes

Kathryn A. Harris, Dervla T. D. Kenna

Journal of Medical Microbiology2014

CelR-mediated activation of the cellobiose-utilization gene cluster in Streptococcus pneumoniae

Sulman Shafeeq, Tomas G. Kloosterman, Oscar P. Kuipers

Microbiology2011

Role of two-component sensory systems of Salmonella enterica serovar Dublin in the pathogenesis of systemic salmonellosis in cattle

Pullinger, Gillian D., van Diemen, Pauline M., Dziva, Francis, Stevens, Mark P.

Microbiology2010

Phylogeny and molecular taxonomy of the Bacillus subtilis species complex and description of Bacillus subtilis subsp. inaquosorum subsp. nov.

Rooney, Alejandro P., Price, Neil P. J., Ehrhardt, Christopher, Swezey, James L., Bannan, Jason D.

International Journal of Systematic and Evolutionary Microbiology2009

A peroxiredoxin from Mycoplasma hyopneumoniae with a possible role in H2O2 detoxification

Machado, Claudio X., Pinto, Paulo M., Zaha, Arnaldo, Ferreira, Henrique B.

Microbiology2009

Diverse circovirus-like genome architectures revealed by environmental metagenomics

Rosario, Karyna, Duffy, Siobain, Breitbart, Mya

Journal of General Virology2009

Characterization of Streptococcus gordonii prophage PH15: complete genome sequence and functional analysis of phage-encoded integrase and endolysin

van der Ploeg, Jan R.

Microbiology2008

The type III secretion system of Proteus mirabilis HI4320 does not contribute to virulence in the mouse model of ascending urinary tract infection

Melanie M. Pearson, Harry L. T. Mobley

Journal of Medical Microbiology2007

Evolution of slime production by coagulase-negative staphylococci and enterotoxigenic characteristics of Staphylococcus aureus strains isolated from various human clinical specimens

Boynukara, Banur, Gulhan, Timur, Gurturk, Kemal, Alisarli, Mustafa, Ogun, Erdal

Journal of Medical Microbiology2007

Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger

Xiao-Lian Yuan, Coenie Goosen, Harrie Kools, Marc J. E. C. van der Maarel, Cees A. M. J. J van den Hondel, Lubbert Dijkhuizen, et al.

Microbiology2006

Combining microarray and genomic data to predict DNA binding motifs

Mao, Linyong, Mackenzie, Chris, Roh, Jung H., Eraso, Jesus M., Kaplan, Samuel, Resat, Haluk

Microbiology2005

Analysis of the first complete genome sequence of an Old World monkey adenovirus reveals a lineage distinct from the six human adenovirus species

Kovacs, Gabor M., Davison, Andrew J., Zakhartchouk, Alexender N., Harrach, Balazs

Journal of General Virology2004

Characterization of the O antigen gene cluster and structural analysis of the O antigen of Francisella tularensis subsp. tularensis

Prior, Joann L., Prior, Richard G., Hitchen, Paul G., Diaper, Helen, Griffin, Kate F., Morris, Howard R., et al.

Journal of Medical Microbiology2003

Azole antifungals are potent inhibitors of cytochrome P450 mono-oxygenases and bacterial growth in mycobacteria and streptomycetes

McLean, Kirsty J., Marshall, Ker R., Richmond, Alison, Hunter, Iain S., Fowler, Kay, Kieser, Tobias, et al.

Microbiology2002

Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv

Camus, Jean-Christophe, Pryor, Melinda J., Medigue, Claudine, Cole, Stewart T.

Microbiology2002

Genome sequence analysis of Tamana bat virus and its relationship with the genus Flavivirus

de Lamballerie, X., Crochu, S., Billoir, F., Neyts, J., de Micco, P., Holmes, E. C., et al.

Journal of General Virology2002

An interactive web-based Pseudomonas aeruginosa genome database: discovery of new genes, pathways and structures

Croft, Larry, Beatson, Scott A., Whitchurch, Cynthia B., Huang, Bixing, Blakeley, Robert L., Mattick, John S.

Microbiology2000

Cloning and assembly strategies in microbial genome projects

Frangeul, Lionel, Nelson, Karen E., Buchrieser, Carmen, Danchin, Antoine, Glaser, Philippe, Kunst, Frank

Microbiology1999

Nucleotide sequences of the trailer, nucleocapsid protein gene and intergenic regions of Newcastle disease virus strain Beaudette C and completion of the entire genome sequence

Krishnamurthy, S, Samal, SK

Journal of General Virology1998