Microbial genomics research — Page 2

Research using genome sequencing, comparative genomics, metagenomics and genomic epidemiology to understand microbial biology and evolution.

Articles — page 2

Showing records 61–120 of 263, ordered using archive prominence and publication metadata.

Rhizobium etli HrpW is a pectin-degrading enzyme and differs from phytopathogenic homologues in enzymically crucial tryptophan and glycine residues

Fauvart, Maarten, Verstraeten, Natalie, Dombrecht, Bruno, Venmans, Ruth, Beullens, Serge, Heusdens, Christophe, et al.

Microbiology2009

Pathogenesis and transmission of the novel swine-origin influenza virus A/H1N1 after experimental infection of pigs

Lange, Elke, Kalthoff, Donata, Blohm, Ulrike, Teifke, Jens P., Breithaupt, Angele, Maresch, Christina, et al.

Journal of General Virology2009

Reclassification of Clostridium proteoclasticum as Butyrivibrio proteoclasticus comb. nov., a butyrate-producing ruminal bacterium

Moon, Christina D., Pacheco, Diana M., Kelly, William J., Leahy, Sinead C., Li, Dong, Kopecny, Jan, et al.

International Journal of Systematic and Evolutionary Microbiology2008

A third genotype of the human parvovirus PARV4 in sub-Saharan Africa

Simmonds, Peter, Douglas, Jill, Bestetti, Giovanna, Longhi, Erika, Antinori, Spinello, Parravicini, Carlo, et al.

Journal of General Virology2008

Genome sequence comparison and superinfection between two related Pseudomonas aeruginosa phages, D3112 and MP22

Heo, Yun-Jeong, Chung, In-Young, Choi, Kelly B., Lau, Gee W., Cho, You-Hee

Microbiology2007

Deletion of a previously uncharacterized flagellar-hook-length control gene fliK modulates the {sigma}54-dependent regulon in Campylobacter jejuni

Kamal, Nahid, Dorrell, Nick, Jagannathan, Aparna, Turner, Susan M., Constantinidou, Chrystala, Studholme, David J., et al.

Microbiology2007

Gene organization and complete sequence of the Hyphantria cunea nucleopolyhedrovirus genome

Ikeda, Motoko, Shikata, Masamitsu, Shirata, Noriko, Chaeychomsri, Sudawan, Kobayashi, Michihiro

Journal of General Virology2006

'Candidatus Protochlamydia amoebophila', an endosymbiont of Acanthamoeba spp.

Collingro, Astrid, Toenshoff, Elena R., Taylor, Michael W., Fritsche, Thomas R., Wagner, Michael, Horn, Matthias

International Journal of Systematic and Evolutionary Microbiology2005

Default taxonomy and the genomics era

van Passel, M. W. J., Bart, A., van der Ende, A.

Microbiology2005

Characterization of the role of LtgB, a putative lytic transglycosylase in Neisseria gonorrhoeae

Kohler, Petra L., Cloud, Karen A., Hackett, Kathleen T., Beck, Eric T., Dillard, Joseph P.

Microbiology2005

Postgenomic taxonomy of human ureaplasmas – a case study based on multiple gene sequences

Fanrong Kong, Gwendolyn L. Gilbert

International Journal of Systematic and Evolutionary Microbiology2004

Sensing and responding to diverse extracellular signals? Analysis of the sensor kinases and response regulators of Streptomyces coelicolor A3(2)

Hutchings, Matthew I., Hoskisson, Paul A., Chandra, Govind, Buttner, Mark J.

Microbiology2004

Natural variation among human adenoviruses: genome sequence and annotation of human adenovirus serotype 1

Lauer, Kim P., Llorente, Isabel, Blair, Eric, Seto, Jason, Krasnov, Vladimir, Purkayastha, Anjan, et al.

Journal of General Virology2004

Geographically and temporally distant natural recombinant isolates of Plum pox virus (PPV) are genetically very similar and form a unique PPV subgroup

Glasa, Miroslav, Palkovics, Laszlo, Kominek, Petr, Labonne, Gerard, Pittnerova, Sona, Kudela, Otakar, et al.

Journal of General Virology2004

Plant-based siderophore: a new avenue in molecular medicine for tuberculosis

Dam, T., Babu, C. R.

Journal of Medical Microbiology2003

Genomics reveals sexual secrets of Aspergillus

Paul S. Dyer, Mathieu Paoletti, David B. Archer

Microbiology2003

The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain Rlow

Papazisi, Leka, Gorton, Timothy S., Kutish, Gerald, Markham, Philip F., Browning, Glenn F., Nguyen, Di Kim, et al.

Microbiology2003

The Bacillus subtilis YufLM two-component system regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium

Tanaka, Kousei, Kobayashi, Kazuo, Ogasawara, Naotake

Microbiology2003

Further variability within the genus Crinivirus, as revealed by determination of the complete RNA genome sequence of Cucurbit yellow stunting disorder virus

Aguilar, Juan M., Franco, Maribel, Marco, Cristina F., Berdiales, Benjamin, Rodriguez-Cerezo, Emilio, Truniger, Veronica, et al.

Journal of General Virology2003

Chemotaxis in the human gastric pathogen Helicobacter pylori: different roles for CheW and the three CheV paralogues, and evidence for CheV2 phosphorylation

Pittman, Marc S., Goodwin, Matthew, Kelly, David J.

Microbiology2001

Processing of GB virus B non-structural proteins in cultured cells requires both NS3 protease and NS4A cofactor

Sbardellati, Andrea, Scarselli, Elisa, Amati, Viviana, Falcinelli, Sabrina, Kekule, Alexander S., Traboni, Cinzia

Journal of General Virology2000

Characterization of a highly divergent TT virus genome

Hallett, R. L., Clewley, J. P., Bobet, F., McKiernan, P. J., Teo, C. G.

Journal of General Virology2000

An in silico evaluation of Tn916 as a tool for generalized mutagenesis in Haemophilus influenzae Rd

Hosking, Sarah L., Deadman, Mary E., Moxon, E. Richard, Peden, John F., Saunders, Nigel J., High, Nicola J.

Microbiology1998

Human enteric Caliciviridae: the complete genome sequence and expression of virus-like particles from a genetic group II small round structured virus

Dingle, KE, Lambden, PR, Caul, EO, Clarke, IN

Journal of General Virology1995

Isolation, characterization and complete genome sequence of PhaxI: a phage of Escherichia coli O157 : H7

Salehe Sabouri Shahrbabak, Zahra Khodabandehlou, Ahmad Reza Shahverdi, Mikael Skurnik, Hans-Wolfgang Ackermann, Markku Varjosalo, et al.

Microbiology2013

Reannotation of the genome sequence of Clostridium difficile strain 630

Marc Monot, Caroline Boursaux-Eude, Marie Thibonnier, David Vallenet, Ivan Moszer, Claudine Medigue, et al.

Journal of Medical Microbiology2011

Rediscovery and genomic characterization of bovine astroviruses

Herman Tse, Wan-Mui Chan, Hoi-Wah Tsoi, Rachel Y. Y. Fan, Candy C. Y. Lau, Susanna K. P. Lau, et al.

Journal of General Virology2011

Binding and degradation of fibrinogen by Bacteroides fragilis and characterization of a 54 kDa fibrinogen-binding protein

Houston, Simon, Blakely, Garry W., McDowell, Andrew, Martin, Lorraine, Patrick, Sheila

Microbiology2010

Streptomyces hypolithicus sp. nov., isolated from an Antarctic hypolith community

Le Roes-Hill, Marilize, Rohland, Jeffrey, Meyers, Paul R., Cowan, Don A., Burton, Stephanie G.

International Journal of Systematic and Evolutionary Microbiology2009

Development of genetic tools for in vivo virulence analysis of Streptococcus sanguinis

Senty Turner, Lauren, Das, Sankar, Kanamoto, Taisei, Munro, Cindy L., Kitten, Todd

Microbiology2009

Aquisalibacillus elongatus gen. nov., sp. nov., a moderately halophilic bacterium of the family Bacillaceae isolated from a saline lake

Marquez, M. C., Carrasco, I. J., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., et al.

International Journal of Systematic and Evolutionary Microbiology2008

Francisella tularensis: unravelling the secrets of an intracellular pathogen

Petra C. F. Oyston

Journal of Medical Microbiology2008

Unmarked insertional mutagenesis in the bovine pathogen Mycoplasma mycoides subsp. mycoides SC: characterization of a lppQ mutant

Janis, Carole, Bischof, Daniela, Gourgues, Geraldine, Frey, Joachim, Blanchard, Alain, Sirand-Pugnet, Pascal

Microbiology2008

D-Lactate metabolism and the obligate requirement for CO2 during growth on nitrite by the facultative lithoautotroph Nitrobacter hamburgensis

Starkenburg, Shawn R., Arp, Daniel J., Bottomley, Peter J.

Microbiology2008

Polysaccharides and virulence of Burkholderia pseudomallei

Sarkar-Tyson, M., Thwaite, J. E., Harding, S. V., Smither, S. J., Oyston, P. C. F., Atkins, T. P., et al.

Journal of Medical Microbiology2007

New bacteriophages that infect the phytopathogen Ralstonia solanacearum

Yamada, Takashi, Kawasaki, Takeru, Nagata, Shoko, Fujiwara, Akiko, Usami, Shoji, Fujie, Makoto

Microbiology2007

Comparative genomic analysis of mycobacteriophage Tweety: evolutionary insights and construction of compatible site-specific integration vectors for mycobacteria

Pham, Thuy T., Jacobs-Sera, Deborah, Pedulla, Marisa L., Hendrix, Roger W., Hatfull, Graham F.

Microbiology2007

A survey of all 11 ABC transporters in fission yeast: two novel ABC transporters are required for red pigment accumulation in a Schizosaccharomyces pombe adenine biosynthetic mutant

Iwaki, Tomoko, Giga-Hama, Yuko, Takegawa, Kaoru

Microbiology2006

Analysis of the role of HP0208, a phase-variable open reading frame, and its homologues HP1416 and HP0159 in the biosynthesis of Helicobacter pylori lipopolysaccharide

Langdon, Rebecca, Craig, Jane E, Goldrick, Marie, Houldsworth, Rebecca, High, Nicola J

Journal of Medical Microbiology2005

Orphans as taxonomically restricted and ecologically important genes

G. A. Wilson, N. Bertrand, Y. Patel, J. B. Hughes, E. J. Feil, D. Field

Microbiology2005

Induction of the SOS regulon of Haemophilus influenzae does not affect phase variation rates at tetranucleotide or dinucleotide repeats

Sweetman, Wendy A., Moxon, E. Richard, Bayliss, Christopher D.

Microbiology2005

Phylogenetic evidence of widespread distribution of genotype 3 JC virus in Africa and identification of a type 7 isolate in an African AIDS patient

Venter, Marietjie, Smit, Sheilagh B., Leman, Patricia, Swanepoel, Robert

Journal of General Virology2004

Characterization of enzootic nasal tumour virus of goats: complete sequence and tissue distribution

Ortin, Aurora, Cousens, Christina, Minguijon, Esmeralda, Pascual, Zoraida, Villarreal, Maider Perez de, Sharp, J. Michael, et al.

Journal of General Virology2003

The signal transducer PII and bicarbonate acquisition in Prochlorococcus marinus PCC 9511, a marine cyanobacterium naturally deficient in nitrate and nitrite assimilation

Palinska, Katarzyna A., Laloui, Wassila, Bedu, Sylvie, Loiseaux-de Goer, Susan, Castets, Anne Marie, Rippka, Rosmarie, et al.

Microbiology2002

A PCR-based strategy to generate integrative targeting alleles with large regions of homology

Davidson, Robert C., Blankenship, Jill R., Kraus, Peter R., de Jesus Berrios, Marisol, Hull, Christina M., D'Souza, Cletus, et al.

Microbiology2002

Complete genome sequence of Montana Myotis leukoencephalitis virus, phylogenetic analysis and comparative study of the 3' untranslated region of flaviviruses with no known vector

Charlier, Nathalie, Leyssen, Pieter, Pleij, Cornelis W. A., Lemey, Philippe, Billoir, Frederique, Van Laethem, Kristel, et al.

Journal of General Virology2002

Erp, an extracellular protein family specific to mycobacteria

de Mendonca-Lima, Leila, Picardeau, Mathieu, Raynaud, Catherine, Rauzier, Jean, Goguet de la Salmoniere, Yves-Olivier, Barker, Lucia, et al.

Microbiology2001

Phylogenetic associations of ISAa1 and IS150-like insertion sequences in Actinobacillus actinomycetemcomitans

Hayashida, Hideaki, Poulsen, Knud, Takagi, Okiuji, Kilian, Mogens

Microbiology2000

Analysis of the complete genome sequence of black queen-cell virus, a picorna-like virus of honey bees

Leat, Neil, Ball, Brenda, Govan, Vandana, Davison, Sean

Journal of General Virology2000

Large RNA segment of Dugbe nairovirus encodes the putative RNA polymerase

Marriott, Anthony C., Nuttall, Patricia A.

Journal of General Virology1996

Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences

Henryk Urbanczyk, Yoshitoshi Ogura, Tetsuya Hayashi

International Journal of Systematic and Evolutionary Microbiology2013

Intragenomic and intraspecific heterogeneity in rrs may surpass interspecific variability in a natural population of Veillonella

Michon, Anne-Laure, Aujoulat, Fabien, Roudiere, Laurent, Soulier, Olivier, Zorgniotti, Isabelle, Jumas-Bilak, Estelle, et al.

Microbiology2010

Autoregulated expression of the gene coding for the leucine-responsive protein, Lrp, a global regulator in Salmonella enterica serovar Typhimurium

McFarland, Kirsty A., Dorman, Charles J.

Microbiology2008

Maritimibacter alkaliphilus gen. nov., sp. nov., a genome-sequenced marine bacterium of the Roseobacter clade in the order Rhodobacterales

Lee, Kiyoung, Choo, Yoe-Jin, Giovannoni, Stephen J., Cho, Jang-Cheon

International Journal of Systematic and Evolutionary Microbiology2007

Prevalence of potential virulence markers in Polish Campylobacter jejuni and Campylobacter coli isolates obtained from hospitalized children and from chicken carcasses

Rozynek, Elzbieta, Dzierzanowska-Fangrat, Katarzyna, Jozwiak, Paulina, Popowski, Janusz, Korsak, Dorota, Dzierzanowska, Danuta

Journal of Medical Microbiology2005

Determining the functionality of putative Tat-dependent signal peptides in Streptomyces coelicolor A3(2) by using two different reporter proteins

Li, Haiming, Jacques, Pierre-Etienne, Ghinet, Mariana Gabriela, Brzezinski, Ryszard, Morosoli, Rolf

Microbiology2005

Overproduction, purification and characterization of FtmPT1, a brevianamide F prenyltransferase from Aspergillus fumigatus

Grundmann, Alexander, Li, Shu-Ming

Microbiology2005