Proteobacteria

Pseudomonas zeshuii sp. nov., isolated from herbicide-contaminated soil

  • 1Key Laboratory for Microbiological Engineering of Agricultural Environment of Ministry of Agriculture, Nanjing Agricultural University, Nanjing 210095, PR China
  • 2Guangdong Institute of Eco-Environmental and Soil Sciences, Guangzhou 510650, PR China
  • Correspondence
    Xing Huang huangxing{at}njau.edu.cn
  • International Journal of Systematic and Evolutionary Microbiology 2012; 62(Pt 11):2608–2612 · https://doi.org/10.1099/ijs.0.037796-0

    View at publisher PubMed

    Abstract

    A Gram-stain-negative, rod-shaped, non-motile, non-spore-forming bacterium, designated strain BY-1T, was isolated from a soil sample from the city of Qiqihar in Heilongjiang Province, PR China. Strain BY-1T grew optimally at pH 7.0 and 30–35 °C in the presence of 0.5 % (w/v) NaCl. Analysis of 16S rRNA gene sequences revealed that strain BY-1T fell within the radiation of the genus Pseudomonas, and showed highest 16S rRNA gene sequence similarities to Pseudomonas luteola IAM 13000T (99.5 %) and Pseudomonas duriflava HR2T (97.3 %); the levels of sequence similarity with respect to other recognized species of the genus Pseudomonas were <96.7 %. Strain BY-1T showed low DNA–DNA relatedness values with Pseudomonas luteola IAM 13000T (29±3.1 %) and Pseudomonas duriflava HR2T (21±1.5 %). The G+C content of the genomic DNA of strain BY-1T was 55.3 mol%. The major fatty acids were C18 : 1, C16 : 0 and summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c). Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine, and the major ubiquinone was Q-9. Data obtained in this study indicated that this isolate represents a novel species of the genus Pseudomonas, for which the name Pseudomonas zeshuii sp. nov. is proposed. The type strain is BY-1T ( = KACC 15471T = ACCC 05688T).

    • These authors contributed equally to this work.

    • The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain BY-1T is JN411093.

    • Two supplementary figures are available with the online version of this paper.